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Report for CCDS14392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14392.1 Public Homo sapiens X PJA1 24 110 108 CCDS HistoryNCBI Gene:64219Re-query CCDS DB by CCDS ID:14392.1Re-query CCDS DB by GeneID:64219See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14392.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374584.3 ENSP00000363712.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374584.3Link to Ensembl Protein Viewer:ENSP00000363712.3Re-query CCDS DB by Nucleotide ID:ENST00000374584Re-query CCDS DB by Protein ID:ENSP00000363712
Original member Current member NCBI NM_022368.5 NP_071763.2 Accepted alive Link to Nucleotide Sequence:NM_022368.5Link to Protein Sequence:NP_071763.2Re-query CCDS DB by Nucleotide ID:NM_022368Re-query CCDS DB by Protein ID:NP_071763Link to BLAST:NP_071763.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071763.2 455 Q8NG27-2 455 100% 0 0

Chromosomal Locations for CCDS 14392.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 69161307 69162381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 69162946 69163238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGGGTCAGGAATCTAGCAAGCCTGTATGGCCCAATCCAACAGGAGGGTATCAGTCCAATACAGGTAGGA
GGTATGGAAGAAGGCATGCTTATGTCAGTTTCAGGCCACCCACGAGCCAGCGGGAAAGGATTGCCAGCCA
GAGAAAGACGAACTCCGAAGTCCCAATGCACAGATCAGCCCCCAGTCAAACCACCAAGAGGAGCCGATCG
CCATTTTCCACTACTCGTCGTAGTTGGGACGACAGCGAGAGTTCGGGAACCAACCTGAATATTGATAATG
AGGACTATTCCAGTACTTCCAGGTGGAGGGATACCGCCAATGACAATGAGGGCCACTCGGATGGCCTGGC
AAGAAGAGGGAGAGGCGAGAGTTCAAGTGGCTATCCCGAGCCAAAGTACCCTGAAGACAAACGGGAAGCG
AGGAGTGACCAAGTGAAACCAGAAAAGGTGCCGAGACGACGACGCACCATGGCCGACCCTGACTTCTGGA
CGCACAGTGATGATTACTACAAATACTGCGACGAAGACTCTGACAGTGACAAAGAGTGGATTGCTGCTCT
GCGTCGGAAATATCGAAGCCGAGAGCAAACCCTGTCCTCCAGTGGCGAAAGCTGGGAGACTCTGCCGGGG
AAAGAAGAGCGGGAACCTCCACAGGCTAAGGTGAGTGCCAGCACTGGCACCAGCCCTGGCCCCGGTGCTA
GTGCCAGTGCCGGGGCTGGCGCCGGGGCCAGTGCTGGCAGCAATGGCAGCAATTACCTTGAAGAAGTTCG
AGAACCATCTCTTCAGGAAGAGCAGGCATCCCTGGAAGAAGGAGAAATTCCTTGGCTCCAGTACCATGAG
AATGACAGTAGCAGTGAGGGGGATAATGATTCTGGTCACGAGTTGATGCAACCTGGGGTATTCATGCTGG
ATGGAAACAACAACCTTGAAGATGACTCCAGTGTGAGCGAAGACCTAGAAGTGGATTGGAGCCTCTTTGA
TGGATTTGCAGATGGGTTAGGAGTGGCTGAAGCCATTTCCTATGTGGACCCTCAGTTCCTCACCTACATG
GCACTTGAAGAACGCCTGGCCCAGGCAATGGAAACTGCCCTTGCGCACTTGGAGTCTCTCGCAGTGGATG
TAGAGGTGGCCAATCCACCAGCAAGCAAGGAGAGCATTGACGCTCTTCCCGAGATCCTGGTCACTGAAGA
TCATGGCGCAGTTGGTCAGGAGATGTGCTGCCCCATCTGCTGTAGCGAATATGTGAAGGGGGAGGTGGCA
ACTGAGCTGCCGTGCCACCACTATTTCCACAAGCCGTGTGTGTCCATCTGGCTTCAGAAGTCAGGCACCT
GCCCCGTGTGCCGCTGCATGTTCCCTCCCCCACTCTAA

Translation (455 aa):
MGQESSKPVWPNPTGGYQSNTGRRYGRRHAYVSFRPPTSQRERIASQRKTNSEVPMHRSAPSQTTKRSRS
PFSTTRRSWDDSESSGTNLNIDNEDYSSTSRWRDTANDNEGHSDGLARRGRGESSSGYPEPKYPEDKREA
RSDQVKPEKVPRRRRTMADPDFWTHSDDYYKYCDEDSDSDKEWIAALRRKYRSREQTLSSSGESWETLPG
KEEREPPQAKVSASTGTSPGPGASASAGAGAGASAGSNGSNYLEEVREPSLQEEQASLEEGEIPWLQYHE
NDSSSEGDNDSGHELMQPGVFMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFLTYM
ALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVA
TELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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