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Report for CCDS14290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14290.1 Public Homo sapiens X SSX1 24 110 108 CCDS HistoryNCBI Gene:6756Re-query CCDS DB by CCDS ID:14290.1Re-query CCDS DB by GeneID:6756See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14290.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376919.4 ENSP00000366118.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376919.4Link to Ensembl Protein Viewer:ENSP00000366118.3Re-query CCDS DB by Nucleotide ID:ENST00000376919Re-query CCDS DB by Protein ID:ENSP00000366118
Original member Current member NCBI NM_001278691.2 NP_001265620.1 Accepted alive Link to Nucleotide Sequence:NM_001278691.2Link to Protein Sequence:NP_001265620.1Re-query CCDS DB by Nucleotide ID:NM_001278691Re-query CCDS DB by Protein ID:NP_001265620Link to BLAST:NP_001265620.1
Original member Current member NCBI NM_005635.4 NP_005626.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005635.4Link to Protein Sequence:NP_005626.1Re-query CCDS DB by Nucleotide ID:NM_005635Re-query CCDS DB by Protein ID:NP_005626Link to BLAST:NP_005626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265620.1 188 Q16384 188 100% 0 0
NP_005626.1 188 Q16384 188 100% 0 0

Chromosomal Locations for CCDS 14290.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48257242 48257310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48257746 48257860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48258536 48258631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48261766 48261815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48263782 48263917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48266287 48266387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGAACGGAGACGACACCTTTGCAAAGAGACCCAGGGATGATGCTAAAGCATCAGAGAAGAGAAGCAAGG
CCTTTGATGATATTGCCACATACTTCTCTAAGAAAGAGTGGAAAAAGATGAAATACTCGGAGAAAATCAG
CTATGTGTATATGAAGAGAAACTATAAGGCCATGACTAAACTAGGTTTCAAAGTCACCCTCCCACCTTTC
ATGTGTAATAAACAGGCCACAGACTTCCAGGGGAATGATTTTGATAATGACCATAACCGCAGGATTCAGG
TTGAACATCCTCAGATGACTTTCGGCAGGCTCCACAGAATCATCCCGAAGATCATGCCCAAGAAGCCAGC
AGAGGACGAAAATGATTCGAAGGGAGTGTCAGAAGCATCTGGCCCACAAAACGATGGGAAACAACTGCAC
CCCCCAGGAAAAGCAAATATTTCTGAGAAGATTAATAAGAGATCTGGACCCAAAAGGGGGAAACATGCCT
GGACCCACAGACTGCGTGAGAGAAAGCAGCTGGTGATTTATGAAGAGATCAGTGACCCTGAGGAAGATGA
CGAGTAA

Translation (188 aa):
MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTKLGFKVTLPPF
MCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDENDSKGVSEASGPQNDGKQLH
PPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEISDPEEDDE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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