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Report for CCDS14272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14272.1 Public Homo sapiens X RGN 24 110 108 CCDS HistoryNCBI Gene:9104Re-query CCDS DB by CCDS ID:14272.1Re-query CCDS DB by GeneID:9104See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14272.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000352078.8 ENSP00000253303.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000352078.8Link to Ensembl Protein Viewer:ENSP00000253303.4Re-query CCDS DB by Nucleotide ID:ENST00000352078Re-query CCDS DB by Protein ID:ENSP00000253303
Original member Current member EBI ENST00000336169.3 ENSP00000338400.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336169.3Link to Ensembl Protein Viewer:ENSP00000338400.3Re-query CCDS DB by Nucleotide ID:ENST00000336169Re-query CCDS DB by Protein ID:ENSP00000338400
Original member Current member EBI ENST00000397180.6 ENSP00000380365.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397180.6Link to Ensembl Protein Viewer:ENSP00000380365.1Re-query CCDS DB by Nucleotide ID:ENST00000397180Re-query CCDS DB by Protein ID:ENSP00000380365
Original member Current member NCBI NM_004683.6 NP_004674.1 Accepted alive Link to Nucleotide Sequence:NM_004683.6Link to Protein Sequence:NP_004674.1Re-query CCDS DB by Nucleotide ID:NM_004683Re-query CCDS DB by Protein ID:NP_004674Link to BLAST:NP_004674.1
Original member Current member NCBI NM_152869.4 NP_690608.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152869.4Link to Protein Sequence:NP_690608.1Re-query CCDS DB by Nucleotide ID:NM_152869Re-query CCDS DB by Protein ID:NP_690608Link to BLAST:NP_690608.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004674.1 299 Q15493-1 299 100% 0 0
NP_690608.1 299 Q15493-1 299 100% 0 0

Chromosomal Locations for CCDS 14272.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 47081145 47081307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47084418 47084600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47089776 47089991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47091678 47091809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47092061 47092215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47092897 47092947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGTCTTCCATTAAGATTGAGTGTGTTTTGCCAGAGAACTGCCGGTGTGGTGAGTCTCCAGTATGGGAGG
AAGTGTCCAACTCTCTGCTCTTTGTAGACATTCCTGCAAAAAAGGTTTGCCGGTGGGATTCATTCACCAA
GCAAGTACAGCGAGTGACCATGGATGCCCCAGTCAGCTCCGTGGCTCTTCGCCAGTCGGGAGGCTATGTT
GCCACCATTGGAACAAAGTTCTGTGCTTTGAACTGGAAAGAACAATCAGCAGTTGTCTTGGCCACGGTGG
ATAACGACAAGAAAAACAATCGCTTCAATGATGGGAAGGTGGATCCCGCCGGGAGGTACTTTGCTGGCAC
CATGGCTGAGGAAACAGCTCCAGCAGTTCTTGAGCGGCACCAGGGGGCCCTGTACTCCCTCTTTCCTGAT
CACCACGTGAAAAAGTACTTTGACCAGGTGGACATTTCCAATGGTTTGGATTGGTCGCTAGACCACAAAA
TCTTCTATTACATTGACAGCCTGTCCTACTCCGTGGATGCCTTTGACTATGACCTGCAGACAGGACAGAT
CTCCAACCGCAGAAGTGTTTACAAGCTAGAAAAGGAAGAACAAATCCCAGATGGAATGTGTATTGATGCT
GAGGGGAAGCTCTGGGTGGCCTGTTACAATGGAGGAAGAGTGATTCGTTTAGATCCTGTGACAGGGAAAA
GACTTCAAACTGTGAAGTTGCCTGTTGATAAAACAACTTCATGCTGCTTTGGAGGGAAGAATTACTCTGA
AATGTATGTGACCTGCGCCCGGGATGGGATGGACCCCGAGGGTCTTTTGAGGCAACCTGAAGCTGGTGGA
ATTTTCAAGATAACTGGTCTGGGGGTCAAAGGAATTGCTCCCTACTCCTATGCGGGATGA

Translation (299 aa):
MSSIKIECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYV
ATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD
HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA
EGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDGMDPEGLLRQPEAGG
IFKITGLGVKGIAPYSYAG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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