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Report for CCDS14235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14235.1 Public Homo sapiens X TMEM47 24 110 108 CCDS HistoryNCBI Gene:83604Re-query CCDS DB by CCDS ID:14235.1Re-query CCDS DB by GeneID:83604See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14235.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000275954.4 ENSP00000275954.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000275954.4Link to Ensembl Protein Viewer:ENSP00000275954.3Re-query CCDS DB by Nucleotide ID:ENST00000275954Re-query CCDS DB by Protein ID:ENSP00000275954
Original member Current member NCBI NM_031442.4 NP_113630.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031442.4Link to Protein Sequence:NP_113630.1Re-query CCDS DB by Nucleotide ID:NM_031442Re-query CCDS DB by Protein ID:NP_113630Link to BLAST:NP_113630.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113630.1 181 Q9BQJ4 181 100% 0 0

Chromosomal Locations for CCDS 14235.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 34630313 34630491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 34639247 34639387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 34656804 34657029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGGCTTCGGCGGGCAGCGGCATGGAGGAGGTGCGCGTGTCGGTGCTGACCCCCTTGAAGCTGGTCGGGC
TGGTGTGCATCTTCCTGGCGCTGTGTCTGGACCTGGGGGCGGTGCTGAGCCCGGCCTGGGTCACAGCTGA
CCACCAGTACTACCTGTCGTTGTGGGAGTCCTGCCGGAAACCCGCCAGCTTGGACATCTGGCACTGCGAG
TCCACGCTCAGCAGCGATTGGCAGATTGCTACTCTGGCTTTACTCCTGGGCGGCGCTGCCATCATTCTCA
TTGCATTCCTGGTGGGTTTGATTTCTATCTGCGTGGGATCTCGAAGGCGTTTCTATAGACCTGTTGCGGT
CATGCTTTTTGCAGCAGTTGTTTTACAGGTTTGCAGCCTGGTCCTTTACCCAATCAAGTTCATTGAAACT
GTGAGCTTGAAAATTTACCATGAGTTCAACTGGGGTTATGGCCTGGCCTGGGGTGCAACTATATTTTCGT
TTGGGGGTGCCATCCTTTATTGCCTGAACCCTAAGAACTATGAAGACTACTACTAG

Translation (181 aa):
MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRKPASLDIWHCE
STLSSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIET
VSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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