NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1414.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1414.2 Public Homo sapiens 1 NAV1 24 110 108 CCDS HistoryNCBI Gene:89796Re-query CCDS DB by CCDS ID:1414.2Re-query CCDS DB by GeneID:89796See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 1414.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1414.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367296.8 ENSP00000356265.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367296.8Link to Ensembl Protein Viewer:ENSP00000356265.4Re-query CCDS DB by Nucleotide ID:ENST00000367296Re-query CCDS DB by Protein ID:ENSP00000356265
Original member Current member NCBI NM_020443.5 NP_065176.3 Accepted alive Link to Nucleotide Sequence:NM_020443.5Link to Protein Sequence:NP_065176.3Re-query CCDS DB by Nucleotide ID:NM_020443Re-query CCDS DB by Protein ID:NP_065176Link to BLAST:NP_065176.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065176.3 1877 Q8NEY1-1 1877 100% 0 0

Chromosomal Locations for CCDS 1414.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 201648669 201649425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201712817 201712919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201718390 201718755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201780421 201780559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201781012 201781309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201782176 201782869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201783406 201783852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201785310 201785351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201786429 201786577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201788468 201788638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201789740 201789792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201790554 201790577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201790689 201790766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201793792 201793875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201794466 201794577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201803593 201803714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201804489 201804497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201807953 201808149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201808418 201808610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201808703 201808871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201809164 201809261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201809442 201809537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201809946 201810105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201810523 201810758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201811603 201811757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201811903 201811974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201812465 201812661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201813140 201813258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201817088 201817285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201819837 201819932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5634 nt):
ATGCTGGGCAGCAGCGTCAAGAGCGTGCAGCCCGAGGTGGAGCTGAGCAGCGGCGGCGGCGACGAGGGCG
CGGACGAACCGCGGGGCGCCGGCAGGAAGGCGGCAGCGGCGGACGGCAGAGGCATGCTGCCCAAGCGCGC
CAAGGCGCCCGGCGGCGGCGGCGGCATGGCCAAGGCCAGCGCGGCTGAGCTGAAGGTCTTCAAGTCCGGC
AGCGTGGACAGCCGTGTCCCCGGCGGGCCGCCCGCCTCCAACCTGCGCAAGCAGAAGTCACTCACCAACC
TCTCTTTTCTCACGGACTCCGAGAAAAAGCTGCAGCTTTATGAGCCCGAATGGAGCGACGATATGGCCAA
GGCGCCCAAAGGCTTAGGCAAGGTGGGGTCCAAGGGCCGTGAAGCTCCGCTGATGTCCAAGACGCTGTCC
AAGTCGGAGCACTCGCTCTTCCAGGCCAAGGGCAGCCCGGCGGGCGGCGCCAAGACCCCCCTGGCTCCGC
TCGCGCCCAACCTGGGAAAGCCGAGCCGGATCCCTCGAGGACCCTATGCGGAGGTCAAGCCGCTCAGCAA
GGCGCCTGAAGCGGCCGTGAGCGAAGATGGCAAATCGGACGACGAGCTGCTCTCCAGCAAGGCCAAGGCG
CAAAAGAGCTCTGGGCCTGTCCCCTCTGCCAAGGGCCAGGAGGAGCGCGCCTTCCTCAAGGTGGACCCCG
AGCTGGTGGTGACCGTGCTGGGAGACCTGGAGCAGCTGCTCTTCAGCCAGATGCTGGACCCAGAGTCCCA
GAGAAAGAGGACAGTGCAGAATGTCCTGGATCTCCGGCAGAACCTGGAAGAGACCATGTCCAGCCTGCGA
GGGTCCCAGGTGACTCACAGCTCCCTGGAGATGACCTGCTACGACAGCGATGATGCCAACCCACGCAGCG
TGTCCAGCCTCTCCAACCGCTCGTCCCCTCTGTCATGGCGCTATGGCCAGTCCAGTCCGCGGCTGCAGGC
TGGTGACGCGCCCTCTGTGGGTGGGAGCTGCCGCTCGGAGGGGACGCCCGCCTGGTACATGCACGGCGAA
CGGGCCCACTACTCCCACACCATGCCCATGCGCAGCCCCAGCAAGCTCAGCCATATCTCCCGCCTGGAGC
TGGTCGAATCCCTGGACTCGGATGAGGTGGACCTCAAGTCCGGCTACATGAGCGACAGTGACCTCATGGG
CAAGACCATGACGGAGGATGATGACATCACTACCGGCTGGGATGAAAGCAGCTCCATCAGTAGTGGACTC
AGCGATGCCTCAGACAATCTCAGTTCAGAAGAATTCAATGCCAGCTCCTCACTCAACTCCCTCCCAAGTA
CTCCCACTGCTTCTCGCAGGAACTCAACAATAGTGCTACGCACAGACTCAGAGAAGCGCTCACTGGCAGA
AAGTGGGCTGAGCTGGTTTAGTGAATCAGAGGAGAAAGCCCCTAAAAAACTGGAGTACGACAGTGGTAGC
CTGAAGATGGAACCTGGGACTTCTAAGTGGCGGAGGGAGCGGCCTGAGAGCTGTGATGATTCATCCAAGG
GTGGAGAACTGAAAAAGCCCATCAGCCTGGGCCACCCTGGTTCCCTGAAGAAGGGCAAGACCCCACCTGT
GGCTGTAACTTCCCCCATCACTCACACAGCCCAGAGTGCCCTCAAAGTCGCAGGCAAACCTGAGGGCAAA
GCTACAGACAAGGGTAAGCTTGCAGTGAAGAATACTGGGCTCCAACGCTCCTCCTCTGATGCTGGTCGGG
ACCGCCTGAGTGATGCTAAGAAGCCCCCCTCGGGCATTGCTCGCCCCTCCACTTCGGGATCCTTTGGCTA
CAAGAAGCCTCCTCCTGCCACAGGCACAGCCACTGTCATGCAAACTGGTGGTTCAGCCACTCTCAGCAAG
ATCCAGAAGTCCTCAGGCATCCCTGTCAAGCCAGTAAATGGGCGCAAGACTAGCTTAGATGTTTCCAACA
GTGCAGAGCCAGGATTCCTGGCTCCTGGAGCCCGTTCTAACATCCAGTACCGCAGCCTGCCCCGGCCAGC
CAAGTCAAGTTCTATGAGCGTGACCGGCGGGCGGGGTGGACCTCGCCCTGTGAGCAGCAGCATTGACCCC
AGTCTCCTCAGCACCAAGCAGGGAGGCCTTACGCCTTCCAGACTGAAGGAGCCTACCAAGGTAGCCAGTG
GGCGGACCACTCCAGCCCCTGTCAATCAGACAGATCGGGAAAAGGAGAAGGCCAAAGCCAAGGCAGTGGC
CTTGGACTCAGACAACATCTCCTTGAAGAGTATTGGCTCCCCAGAAAGTACTCCCAAGAACCAAGCAAGC
CACCCCACAGCCACCAAGCTGGCAGAGCTGCCACCAACCCCTCTCAGGGCCACAGCGAAGAGCTTTGTCA
AACCACCCTCACTAGCCAATCTTGACAAGGTCAACTCCAACAGTCTGGATCTACCATCATCCAGTGATAC
CACCCATGCTTCAAAGGTCCCAGATCTGCATGCTACAAGCTCAGCATCTGGGGGCCCTCTCCCTTCCTGC
TTCACCCCCAGTCCGGCACCCATCCTCAATATTAACTCAGCCAGCTTCTCCCAGGGCCTGGAGCTAATGA
GTGGTTTCAGTGTGCCAAAAGAGACCCGCATGTACCCCAAACTCTCAGGCCTGCACAGGAGCATGGAGTC
CCTCCAGATGCCAATGAGCCTCCCCAGTGCCTTCCCCAGCAGTACTCCCGTCCCCACCCCACCTGCTCCC
CCTGCTGCTCCCACAGAAGAAGAGACGGAAGAGCTGACTTGGAGTGGAAGCCCCAGAGCTGGGCAACTGG
ACAGTAATCAGCGGGATCGGAACACTCTTCCCAAGAAAGGGCTCAGGTACCAGCTTCAGTCCCAGGAGGA
GACCAAGGAGAGGCGACATTCCCATACCATTGGTGGGCTGCCTGAATCCGATGACCAGTCAGAGCTGCCT
TCTCCCCCTGCACTTCCCATGTCTCTGAGTGCAAAGGGCCAACTTACCAACATAGTGAGTCCCACTGCGG
CCACCACGCCAAGAATCACCCGCTCCAACAGCATCCCCACCCACGAGGCGGCCTTCGAGCTGTACAGCGG
CTCCCAAATGGGGAGCACCCTGTCCCTGGCCGAGAGACCCAAGGGAATGATTCGGTCAGGATCCTTCCGA
GACCCCACGGACGATGTTCACGGCTCAGTGCTGTCCCTGGCCTCCAGTGCCTCCTCCACCTACTCCTCAG
CTGAGGAGAGGATGCAATCTGAGCAAATCCGGAAGCTTCGTAGGGAACTGGAATCATCCCAGGAAAAAGT
GGCCACCTTGACGTCTCAGCTTTCTGCCAATGCTAATCTGGTGGCTGCTTTTGAGCAGAGCCTGGTGAAT
ATGACATCCCGCCTGCGACACCTGGCAGAGACGGCCGAGGAGAAGGACACTGAGCTGCTGGATTTGCGAG
AAACCATAGACTTTCTGAAGAAAAAGAACTCTGAGGCCCAGGCAGTCATTCAGGGAGCCCTTAATGCCTC
AGAAACCACACCCAAAGAACTTCGGATCAAGAGACAAAACTCCTCAGATAGCATCTCAAGCCTCAACAGC
ATCACTAGCCATTCCAGCATCGGCAGCAGCAAGGATGCTGATGCGAAAAAGAAGAAAAAAAAGAGTTGGG
TCTATGAGCTTCGAAGTTCCTTCAACAAAGCGTTCAGTATAAAAAAGGGGCCCAAGTCAGCTTCCTCATA
CTCGGATATAGAGGAGATTGCTACACCCGACTCTTCAGCCCCCTCATCCCCCAAACTACAGCATGGTTCT
ACAGAGACTGCTTCACCCTCCATCAAGTCCTCCACCTCGTCCTCCGTGGGCACTGATGTCACCGAGGGCC
CTGCTCACCCAGCCCCCCACACTAGGCTGTTCCATGCAAATGAGGAGGAGGAGCCAGAGAAGAAGGAGGT
ATCGGAGCTGCGCTCTGAGCTATGGGAGAAGGAAATGAAGCTTACAGACATCCGCTTGGAGGCCCTCAAC
TCTGCCCACCAACTGGATCAGCTTCGGGAGACCATGCACAACATGCAGTTGGAGGTGGACCTGCTGAAAG
CAGAGAATGACCGACTGAAGGTAGCCCCAGGCCCCTCATCAGGCTCCACTCCAGGGCAGGTCCCTGGATC
ATCTGCATTATCTTCCCCACGCCGCTCCCTAGGCCTGGCACTCACCCATTCCTTCGGCCCCAGTCTTGCA
GACACAGACCTGTCACCCATGGATGGCATCAGTACTTGTGGTCCAAAGGAGGAAGTGACCCTCCGGGTGG
TGGTGAGGATGCCCCCGCAGCACATCATCAAAGGGGACTTGAAGCAGCAGGAATTCTTCCTGGGCTGTAG
CAAGGTCAGTGGAAAAGTTGACTGGAAGATGCTGGATGAAGCTGTTTTCCAAGTGTTCAAGGACTATATT
TCTAAAATGGACCCAGCCTCTACCCTGGGACTAAGCACTGAGTCCATCCATGGCTACAGCATCAGCCACG
TGAAACGAGTGTTGGATGCAGAGCCCCCCGAGATGCCTCCTTGCCGTCGAGGTGTCAATAACATATCAGT
CTCCCTCAAAGGTCTGAAGGAGAAATGCGTCGACAGCCTGGTGTTCGAGACGCTGATCCCCAAGCCGATG
ATGCAGCACTACATAAGCCTCCTGCTGAAGCACCGGCGCCTCGTCCTCTCGGGCCCCAGCGGCACGGGCA
AGACCTACCTGACCAATCGCTTGGCCGAGTACCTGGTGGAGCGCTCTGGCCGTGAGGTCACAGAGGGCAT
CGTCAGCACCTTCAACATGCACCAGCAGTCTTGCAAGGATCTGCAACTGTATCTTTCCAACCTAGCCAAC
CAGATAGACCGGGAAACAGGAATTGGGGATGTGCCCCTGGTGATTCTATTGGATGACCTGAGTGAAGCAG
GCTCCATCAGTGAGTTGGTCAATGGGGCCCTCACCTGCAAGTATCATAAATGTCCCTATATTATAGGTAC
CACCAATCAGCCTGTAAAAATGACACCCAACCATGGCTTGCACTTGAGCTTCAGGATGTTGACCTTCTCC
AACAACGTGGAGCCAGCCAATGGCTTCCTGGTTCGTTACCTGAGGAGGAAGCTGGTAGAGTCAGACAGCG
ACATCAATGCCAACAAGGAAGAGCTGCTTCGGGTGCTCGACTGGGTACCCAAGCTGTGGTATCATCTCCA
CACCTTCCTTGAGAAGCACAGCACCTCAGACTTCCTCATCGGCCCTTGCTTCTTTCTGTCGTGTCCCATT
GGCATTGAGGACTTCCGGACCTGGTTCATTGACCTGTGGAACAACTCTATCATTCCCTATCTACAGGAAG
GAGCCAAGGATGGGATAAAGGTCCATGGACAGAAAGCTGCTTGGGAGGACCCAGTGGAATGGGTCCGGGA
CACACTTCCCTGGCCATCAGCCCAACAAGACCAATCAAAGCTGTACCACCTGCCCCCACCCACCGTGGGC
CCTCACAGCATTGCCTCACCTCCCGAGGATAGGACAGTCAAAGACAGCACCCCAAGTTCTCTGGACTCAG
ATCCTCTGATGGCCATGCTGCTGAAACTTCAAGAAGCTGCCAACTACATTGAGTCTCCAGATCGAGAAAC
CATCCTGGACCCCAACCTTCAGGCAACACTTTAA

Translation (1877 aa):
MLGSSVKSVQPEVELSSGGGDEGADEPRGAGRKAAAADGRGMLPKRAKAPGGGGGMAKASAAELKVFKSG
SVDSRVPGGPPASNLRKQKSLTNLSFLTDSEKKLQLYEPEWSDDMAKAPKGLGKVGSKGREAPLMSKTLS
KSEHSLFQAKGSPAGGAKTPLAPLAPNLGKPSRIPRGPYAEVKPLSKAPEAAVSEDGKSDDELLSSKAKA
QKSSGPVPSAKGQEERAFLKVDPELVVTVLGDLEQLLFSQMLDPESQRKRTVQNVLDLRQNLEETMSSLR
GSQVTHSSLEMTCYDSDDANPRSVSSLSNRSSPLSWRYGQSSPRLQAGDAPSVGGSCRSEGTPAWYMHGE
RAHYSHTMPMRSPSKLSHISRLELVESLDSDEVDLKSGYMSDSDLMGKTMTEDDDITTGWDESSSISSGL
SDASDNLSSEEFNASSSLNSLPSTPTASRRNSTIVLRTDSEKRSLAESGLSWFSESEEKAPKKLEYDSGS
LKMEPGTSKWRRERPESCDDSSKGGELKKPISLGHPGSLKKGKTPPVAVTSPITHTAQSALKVAGKPEGK
ATDKGKLAVKNTGLQRSSSDAGRDRLSDAKKPPSGIARPSTSGSFGYKKPPPATGTATVMQTGGSATLSK
IQKSSGIPVKPVNGRKTSLDVSNSAEPGFLAPGARSNIQYRSLPRPAKSSSMSVTGGRGGPRPVSSSIDP
SLLSTKQGGLTPSRLKEPTKVASGRTTPAPVNQTDREKEKAKAKAVALDSDNISLKSIGSPESTPKNQAS
HPTATKLAELPPTPLRATAKSFVKPPSLANLDKVNSNSLDLPSSSDTTHASKVPDLHATSSASGGPLPSC
FTPSPAPILNINSASFSQGLELMSGFSVPKETRMYPKLSGLHRSMESLQMPMSLPSAFPSSTPVPTPPAP
PAAPTEEETEELTWSGSPRAGQLDSNQRDRNTLPKKGLRYQLQSQEETKERRHSHTIGGLPESDDQSELP
SPPALPMSLSAKGQLTNIVSPTAATTPRITRSNSIPTHEAAFELYSGSQMGSTLSLAERPKGMIRSGSFR
DPTDDVHGSVLSLASSASSTYSSAEERMQSEQIRKLRRELESSQEKVATLTSQLSANANLVAAFEQSLVN
MTSRLRHLAETAEEKDTELLDLRETIDFLKKKNSEAQAVIQGALNASETTPKELRIKRQNSSDSISSLNS
ITSHSSIGSSKDADAKKKKKKSWVYELRSSFNKAFSIKKGPKSASSYSDIEEIATPDSSAPSSPKLQHGS
TETASPSIKSSTSSSVGTDVTEGPAHPAPHTRLFHANEEEEPEKKEVSELRSELWEKEMKLTDIRLEALN
SAHQLDQLRETMHNMQLEVDLLKAENDRLKVAPGPSSGSTPGQVPGSSALSSPRRSLGLALTHSFGPSLA
DTDLSPMDGISTCGPKEEVTLRVVVRMPPQHIIKGDLKQQEFFLGCSKVSGKVDWKMLDEAVFQVFKDYI
SKMDPASTLGLSTESIHGYSISHVKRVLDAEPPEMPPCRRGVNNISVSLKGLKEKCVDSLVFETLIPKPM
MQHYISLLLKHRRLVLSGPSGTGKTYLTNRLAEYLVERSGREVTEGIVSTFNMHQQSCKDLQLYLSNLAN
QIDRETGIGDVPLVILLDDLSEAGSISELVNGALTCKYHKCPYIIGTTNQPVKMTPNHGLHLSFRMLTFS
NNVEPANGFLVRYLRRKLVESDSDINANKEELLRVLDWVPKLWYHLHTFLEKHSTSDFLIGPCFFLSCPI
GIEDFRTWFIDLWNNSIIPYLQEGAKDGIKVHGQKAAWEDPVEWVRDTLPWPSAQQDQSKLYHLPPPTVG
PHSIASPPEDRTVKDSTPSSLDSDPLMAMLLKLQEAANYIESPDRETILDPNLQATL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH