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Report for CCDS14031.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14031.1 Public Homo sapiens 22 SMDT1 24 110 108 CCDS HistoryNCBI Gene:91689Re-query CCDS DB by CCDS ID:14031.1Re-query CCDS DB by GeneID:91689See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14031.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331479.4 ENSP00000327467.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331479.4Link to Ensembl Protein Viewer:ENSP00000327467.3Re-query CCDS DB by Nucleotide ID:ENST00000331479Re-query CCDS DB by Protein ID:ENSP00000327467
Original member Current member NCBI NM_033318.5 NP_201575.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033318.5Link to Protein Sequence:NP_201575.3Re-query CCDS DB by Nucleotide ID:NM_033318Re-query CCDS DB by Protein ID:NP_201575Link to BLAST:NP_201575.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_201575.3 107 Q9H4I9 107 100% 0 0

Chromosomal Locations for CCDS 14031.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 42079769 42079954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42081925 42082062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (324 nt):
ATGGCGTCCGGAGCGGCTCGCTGGCTAGTATTGGCACCCGTCAGGTCCGGGGCTCTCCGGAGCGGGCCTA
GCTTGAGGAAAGATGGCGATGTCTCCGCCGCATGGAGCGGCTCAGGCCGGAGCCTGGTACCGTCGAGGTC
AGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCGGTGAAAATGTCCTTCGGCCTTCTCCGTGTG
TTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGG
AACATGACATTTTTGTTCCAGAGGATGATGATGATGATGACTAA

Translation (107 aa):
MASGAARWLVLAPVRSGALRSGPSLRKDGDVSAAWSGSGRSLVPSRSVIVTRSGAILPKPVKMSFGLLRV
FSIVIPFLYVGTLISKNFAALLEEHDIFVPEDDDDDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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