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Report for CCDS14027.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14027.2 Public Homo sapiens 22 SEPTIN3 24 110 108 CCDS HistoryNCBI Gene:55964Re-query CCDS DB by CCDS ID:14027.2Re-query CCDS DB by GeneID:55964See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14027.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396425.7 ENSP00000379703.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396425.7Link to Ensembl Protein Viewer:ENSP00000379703.3Re-query CCDS DB by Nucleotide ID:ENST00000396425Re-query CCDS DB by Protein ID:ENSP00000379703
Original member Current member NCBI NM_019106.6 NP_061979.3 Accepted alive Link to Nucleotide Sequence:NM_019106.6Link to Protein Sequence:NP_061979.3Re-query CCDS DB by Nucleotide ID:NM_019106Re-query CCDS DB by Protein ID:NP_061979Link to BLAST:NP_061979.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061979.3 350 Q9UH03-2 350 100% 0 0

Chromosomal Locations for CCDS 14027.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 41977065 41977074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41981645 41981836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41985984 41986112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41987206 41987287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41987622 41987759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41989567 41989684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41991573 41991668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41992664 41992763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41994290 41994341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41994621 41994756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGTCCAAAGGGCTCCCAGAGACCAGGACGGACGCAGCCATGTCAGAGCTGGTGCCTGAGCCCAGGCCTA
AGCCAGCGGTGCCCATGAAGCCCATGAGCATCAACTCCAACCTGCTGGGCTACATCGGCATCGACACCAT
CATCGAGCAGATGCGCAAGAAGACCATGAAGACCGGTTTCGACTTCAACATCATGGTCGTTGGCCAGAGT
GGACTGGGCAAATCAACGCTGGTCAACACGCTCTTCAAATCCCAAGTGAGCCGCAAGGCCTCCAGCTGGA
ACCGGGAGGAGAAGATCCCCAAGACAGTGGAGATCAAAGCTATCGGGCATGTGATAGAGGAAGGCGGTGT
CAAAATGAAGCTGACCGTCATCGACACCCCAGGCTTTGGAGACCAAATCAACAATGAAAACTGCTGGGAG
CCCATTGAGAAGTACATCAATGAGCAGTACGAGAAGTTCCTGAAGGAGGAGGTCAACATCGCCAGGAAGA
AACGCATCCCTGACACTCGTGTCCACTGCTGCCTTTACTTCATCTCTCCCACAGGACACTCCTTGCGACC
TCTGGATCTTGAGTTCATGAAACACCTCAGCAAGGTTGTGAACATCATCCCTGTCATTGCTAAGGCTGAC
ACCATGACCCTGGAGGAGAAGTCTGAATTCAAGCAAAGGGTTCGCAAGGAGCTTGAAGTAAATGGCATTG
AATTCTACCCCCAGAAGGAATTTGATGAGGATTTGGAGGATAAGACGGAGAATGACAAAATCAGGCAGGA
GAGCATGCCTTTTGCTGTGGTGGGAAGTGACAAGGAGTACCAAGTGAATGGCAAGAGGGTCCTCGGCCGA
AAAACTCCATGGGGGATCATCGAAGTGGAAAACCTCAACCACTGTGAGTTTGCCCTGCTTCGAGACTTTG
TCATCAGGACCCACCTCCAGGACCTCAAGGAAGTGACACACAACATCCACTATGAGACTTACAGGGCCAA
GCGGCTCAATGACAATGGAGGCCTCCCTCCGGTGAGCGTGGACACAGAGGAAAGCCACGACAGTAACCCA
TGA

Translation (350 aa):
MSKGLPETRTDAAMSELVPEPRPKPAVPMKPMSINSNLLGYIGIDTIIEQMRKKTMKTGFDFNIMVVGQS
GLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE
PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKAD
TMTLEEKSEFKQRVRKELEVNGIEFYPQKEFDEDLEDKTENDKIRQESMPFAVVGSDKEYQVNGKRVLGR
KTPWGIIEVENLNHCEFALLRDFVIRTHLQDLKEVTHNIHYETYRAKRLNDNGGLPPVSVDTEESHDSNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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