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Report for CCDS14005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14005.1 Public Homo sapiens 22 SLC25A17 24 110 108 CCDS HistoryNCBI Gene:10478Re-query CCDS DB by CCDS ID:14005.1Re-query CCDS DB by GeneID:10478See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14005.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000435456.7 ENSP00000390722.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000435456.7Link to Ensembl Protein Viewer:ENSP00000390722.2Re-query CCDS DB by Nucleotide ID:ENST00000435456Re-query CCDS DB by Protein ID:ENSP00000390722
Original member Current member NCBI NM_006358.4 NP_006349.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006358.4Link to Protein Sequence:NP_006349.1Re-query CCDS DB by Nucleotide ID:NM_006358Re-query CCDS DB by Protein ID:NP_006349Link to BLAST:NP_006349.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006349.1 307 O43808 307 100% 0 0

Chromosomal Locations for CCDS 14005.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 40770834 40770981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40773937 40774019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40777040 40777135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40777228 40777373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40779009 40779125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40792525 40792676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40794514 40794580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40799023 40799083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40819195 40819248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGCTTCCGTGCTGTCCTACGAAAGCCTGGTCCACGCCGTGGCCGGAGCCGTGGGAAGCGTGACAGCAA
TGACAGTGTTTTTTCCCCTGGATACAGCTAGACTTCGACTTCAGGTTGATGAGAAAAGAAAATCCAAAAC
TACACACATGGTGCTCCTGGAGATCATTAAAGAAGAAGGACTCCTGGCACCATATCGAGGGTGGTTTCCA
GTGATTTCCAGTCTCTGCTGCTCCAATTTTGTCTATTTCTACACTTTTAATAGCCTCAAAGCACTCTGGG
TCAAAGGTCAACATTCTACCACTGGAAAAGATCTGGTAGTTGGGTTTGTTGCAGGAGTGGTTAATGTGTT
GCTAACAACTCCACTCTGGGTGGTAAACACCAGACTGAAGCTTCAAGGAGCAAAATTTAGGAATGAAGAC
ATTGTACCAACAAACTACAAAGGTATCATTGATGCTTTTCATCAGATCATTCGCGATGAAGGAATCTCGG
CTTTATGGAATGGCACATTTCCCTCATTGCTGTTGGTCTTCAATCCTGCCATCCAGTTCATGTTTTATGA
AGGTTTAAAACGGCAGCTTTTAAAGAAACGGATGAAGCTTTCTTCCTTGGATGTGTTCATCATTGGTGCA
GTAGCCAAAGCGATTGCCACCACGGTGACCTATCCCCTGCAGACGGTACAGTCAATTCTGAGGTTTGGGC
GTCATAGACTAAACCCAGAAAACAGAACATTGGGAAGTCTTCGGAATATTCTCTATCTTCTTCACCAACG
AGTAAGACGTTTTGGAATAATGGGACTCTACAAAGGCCTTGAAGCCAAACTGCTGCAGACAGTCCTCACT
GCTGCTCTCATGTTCCTTGTTTATGAGAAACTGACAGCTGCCACCTTCACAGTTATGGGGCTGAAGCGTG
CACACCAACACTGA

Translation (307 aa):
MASVLSYESLVHAVAGAVGSVTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEGLLAPYRGWFP
VISSLCCSNFVYFYTFNSLKALWVKGQHSTTGKDLVVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNED
IVPTNYKGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPAIQFMFYEGLKRQLLKKRMKLSSLDVFIIGA
VAKAIATTVTYPLQTVQSILRFGRHRLNPENRTLGSLRNILYLLHQRVRRFGIMGLYKGLEAKLLQTVLT
AALMFLVYEKLTAATFTVMGLKRAHQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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