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Report for CCDS13980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13980.1 Public Homo sapiens 22 CBX6 24 110 108 CCDS HistoryNCBI Gene:23466Re-query CCDS DB by CCDS ID:13980.1Re-query CCDS DB by GeneID:23466See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13980.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407418.8 ENSP00000384490.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000407418.8Link to Ensembl Protein Viewer:ENSP00000384490.3Re-query CCDS DB by Nucleotide ID:ENST00000407418Re-query CCDS DB by Protein ID:ENSP00000384490
Original member Current member NCBI NM_014292.5 NP_055107.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014292.5Link to Protein Sequence:NP_055107.3Re-query CCDS DB by Nucleotide ID:NM_014292Re-query CCDS DB by Protein ID:NP_055107Link to BLAST:NP_055107.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055107.3 412 O95503 412 100% 0 0

Chromosomal Locations for CCDS 13980.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 38866209 38867201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38871480 38871546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38871692 38871757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38871902 38871945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38872122 38872190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGGAGCTGTCTGCAGTGGGCGAGCGGGTCTTCGCGGCCGAATCCATCATCAAACGGCGGATCCGAAAGG
GACGCATCGAGTACCTGGTGAAATGGAAGGGGTGGGCGATCAAGTACAGCACTTGGGAGCCCGAGGAGAA
CATCCTGGACTCGCGGCTCATTGCAGCCTTCGAACAAAAGGAGAGGGAGCGTGAGCTGTATGGGCCCAAG
AAGAGGGGACCCAAACCCAAAACTTTCCTCCTGAAGGCGCGGGCCCAGGCCGAGGCCCTCCGCATCAGTG
ATGTGCATTTCTCTGTCAAGCCGAGCGCCAGTGCCTCCTCGCCCAAGCTGCACTCCAGCGCAGCCGTGCA
CCGGCTCAAGAAGGACATCCGCCGCTGCCACCGTATGTCCCGCCGTCCCCTGCCCCGCCCGGACCCGCAG
GGGGGCAGCCCCGGACTGCGCCCGCCCATTTCGCCCTTCTCGGAGACGGTGCGCATCATCAACCGCAAGG
TGAAGCCGCGGGAGCCCAAGCGGAACCGCATCATCCTGAACCTGAAGGTGATCGACAAGGGCGCTGGCGG
CGGGGGCGCCGGGCAGGGGGCCGGGGCGCTGGCCCGCCCCAAAGTCCCCTCGCGGAACCGCGTTATAGGC
AAGAGCAAGAAGTTCAGCGAGAGCGTCCTGCGTACACAGATCCGCCACATGAAGTTCGGCGCCTTTGCGC
TGTACAAGCCTCCGCCCGCCCCCCTGGTAGCCCCGTCCCCCGGCAAGGCTGAGGCCTCAGCCCCGGGCCC
TGGGCTACTTCTGGCCGCCCCCGCCGCCCCCTACGACGCCCGCAGCTCTGGCTCCTCCGGCTGCCCCTCG
CCTACACCACAGTCCTCTGACCCCGACGACACGCCCCCCAAGCTCCTCCCCGAGACCGTGAGCCCATCCG
CCCCCAGCTGGCGCGAGCCGGAGGTGCTCGACCTGTCCCTCCCTCCCGAGTCGGCAGCCACCAGCAAGCG
GGCACCGCCTGAGGTCACAGCTGCTGCCGGCCCGGCACCTCCCACGGCCCCTGAGCCCGCCGGTGCCTCC
TCCGAGCCCGAGGCTGGGGACTGGCGCCCCGAGATGTCACCCTGCTCCAATGTGGTCGTCACCGATGTCA
CCAGCAACCTCCTGACGGTCACAATCAAGGAATTCTGCAACCCTGAGGATTTCGAGAAGGTGGCTGCTGG
GGTAGCAGGCGCCGCTGGGGGCGGTGGCAGCATTGGGGCGAGCAAGTGA

Translation (412 aa):
MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKERERELYGPK
KRGPKPKTFLLKARAQAEALRISDVHFSVKPSASASSPKLHSSAAVHRLKKDIRRCHRMSRRPLPRPDPQ
GGSPGLRPPISPFSETVRIINRKVKPREPKRNRIILNLKVIDKGAGGGGAGQGAGALARPKVPSRNRVIG
KSKKFSESVLRTQIRHMKFGAFALYKPPPAPLVAPSPGKAEASAPGPGLLLAAPAAPYDARSSGSSGCPS
PTPQSSDPDDTPPKLLPETVSPSAPSWREPEVLDLSLPPESAATSKRAPPEVTAAAGPAPPTAPEPAGAS
SEPEAGDWRPEMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFEKVAAGVAGAAGGGGSIGASK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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