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Report for CCDS13805.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13805.2 Public Homo sapiens 22 RAB36 24 110 108 CCDS HistoryNCBI Gene:9609Re-query CCDS DB by CCDS ID:13805.2Re-query CCDS DB by GeneID:9609See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 13805.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263116.8 ENSP00000263116.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263116.8Link to Ensembl Protein Viewer:ENSP00000263116.3Re-query CCDS DB by Nucleotide ID:ENST00000263116Re-query CCDS DB by Protein ID:ENSP00000263116
Original member Current member NCBI NM_004914.5 NP_004905.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004914.5Link to Protein Sequence:NP_004905.3Re-query CCDS DB by Nucleotide ID:NM_004914Re-query CCDS DB by Protein ID:NP_004905Link to BLAST:NP_004905.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004905.3 267 O95755-1 267 100% 0 0

Chromosomal Locations for CCDS 13805.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 23146617 23146685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23150063 23150154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23152461 23152526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23153033 23153134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23155968 23156032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23157992 23158043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23158898 23158979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23159163 23159253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23160879 23160998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23161500 23161564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGAGGTCCTCCCTGACACCTTTGGGGCCCCCTGTGAGCCGCGACCGTGTCATCGCCAGCTTCCCTAAGT
GGTACACGCCGGAAGCCTGTTTGCAGCTCAGGGAGCACTTCCACGGGCAGGTCAGCGCTGCCTGCCAACG
CAGGAACACGGGGACTGTCGGGCTCAAACTCTCCAAGGTGGTGGTGGTTGGCGATCTCTACGTGGGGAAG
ACCAGCCTCATCCACAGGTTTTGCAAGAATGTTTTTGATCGAGACTACAAGGCCACCATTGGGGTGGACT
TTGAAATTGAGCGCTTTGAGATTGCTGGGATTCCCTATAGCCTCCAGATCTGGGACACAGCTGGGCAGGA
GAAGTTCAAGTGCATCGCATCTGCCTACTACCGGGGTGCCCAGGTGATCATCACGGCCTTTGACCTCACT
GACGTGCAGACCCTGGAGCATACCAGGCAGTGGTTGGAGGATGCTCTGAGGGAGAACGAGGCAGGCTCCT
GCTTCATCTTCCTCGTGGGAACCAAGAAGGACCTTCTGTCAGGGGCCGCATGTGAGCAGGCCGAAGCAGA
CGCTGTGCACCTGGCCAGGGAGATGCAGGCCGAGTACTGGTCAGTGTCGGCCAAGACTGGCGAGAACGTG
AAGGCATTCTTCAGCCGCGTAGCCGCCCTGGCATTCGAGCAGTCGGTGCTGCAGGACCTGGAGAGGCAGA
GCAGTGCCCGGCTCCAGGTCGGCAATGGAGACCTAATCCAAATGGAAGGGAGTCCGCCCGAGACCCAGGA
GAGCAAGAGGCCCTCCAGCCTGGGCTGCTGCTAA

Translation (267 aa):
MRSSLTPLGPPVSRDRVIASFPKWYTPEACLQLREHFHGQVSAACQRRNTGTVGLKLSKVVVVGDLYVGK
TSLIHRFCKNVFDRDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLT
DVQTLEHTRQWLEDALRENEAGSCFIFLVGTKKDLLSGAACEQAEADAVHLAREMQAEYWSVSAKTGENV
KAFFSRVAALAFEQSVLQDLERQSSARLQVGNGDLIQMEGSPPETQESKRPSSLGCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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