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Report for CCDS13780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13780.1 Public Homo sapiens 22 KLHL22 24 110 108 CCDS HistoryNCBI Gene:84861Re-query CCDS DB by CCDS ID:13780.1Re-query CCDS DB by GeneID:84861See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13780.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328879.9 ENSP00000331682.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328879.9Link to Ensembl Protein Viewer:ENSP00000331682.4Re-query CCDS DB by Nucleotide ID:ENST00000328879Re-query CCDS DB by Protein ID:ENSP00000331682
Original member Current member NCBI NM_032775.4 NP_116164.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032775.4Link to Protein Sequence:NP_116164.2Re-query CCDS DB by Nucleotide ID:NM_032775Re-query CCDS DB by Protein ID:NP_116164Link to BLAST:NP_116164.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116164.2 634 Q53GT1-1 634 100% 0 0

Chromosomal Locations for CCDS 13780.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 20442073 20442438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20446443 20446676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20457808 20458000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20464858 20465576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20471350 20471515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20488985 20489211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGGCAGAGGAGCAGGAGTTCACCCAGCTCTGCAAGTTGCCTGCACAGCCCTCACACCCACACTGCGTGA
ACAACACCTACCGCAGCGCACAGCACTCCCAGGCTCTGCTCCGAGGGCTGCTGGCTCTCCGGGACAGCGG
AATCCTCTTCGATGTTGTGCTGGTGGTGGAGGGCAGACACATCGAGGCCCATCGCATCCTGCTGGCTGCG
TCCTGCGATTACTTCAGAGGAATGTTTGCTGGGGGATTGAAGGAGATGGAACAGGAAGAGGTCCTGATCC
ACGGTGTGTCCTACAATGCTATGTGCCAAATCCTACATTTCATATACACCTCCGAGCTGGAGCTCAGCCT
GAGCAATGTACAAGAGACACTGGTGGCTGCCTGCCAGCTTCAGATCCCAGAAATTATCCATTTCTGCTGT
GATTTCCTCATGTCCTGGGTGGACGAAGAGAACATTCTCGATGTCTACCGGCTGGCAGAGCTGTTTGACT
TGAGCCGCCTGACTGAGCAACTGGACACCTATATCCTCAAAAACTTTGTGGCCTTCTCTCGGACTGACAA
GTACCGCCAGCTTCCATTGGAGAAGGTCTACTCCCTCCTCAGCAGCAATCGCCTGGAGGTCTCCTGCGAG
ACCGAGGTATATGAGGGGGCCCTTCTCTACCATTATAGCCTGGAGCAGGTGCAGGCTGACCAGATCTCGC
TGCACGAGCCCCCAAAGCTCCTTGAGACAGTGCGGTTTCCGCTGATGGAAGCTGAGGTCCTGCAGCGGCT
GCATGACAAGCTGGACCCCAGCCCTTTGAGGGACACAGTGGCCAGCGCCCTCATGTACCACCGGAACGAG
AGCCTACAGCCCAGCCTGCAGAGCCCGCAAACGGAGCTGCGGTCGGACTTCCAGTGCGTTGTGGGCTTCG
GGGGCATTCACTCCACGCCGTCCACTGTCCTCAGCGACCAGGCCAAGTATCTAAACCCCTTACTGGGAGA
GTGGAAGCACTTCACTGCCTCCCTGGCCCCCCGCATGTCCAACCAGGGCATCGCGGTGCTCAACAACTTC
GTATACTTGATTGGAGGGGACAACAATGTCCAAGGATTTCGAGCAGAGTCCCGATGCTGGAGGTATGACC
CACGGCACAACCGCTGGTTCCAGATCCAGTCCCTGCAGCAGGAGCACGCCGACCTGTCCGTGTGTGTTGT
AGGCAGGTACATCTACGCTGTGGCGGGCCGTGACTACCACAATGACCTGAATGCTGTGGAGCGCTACGAC
CCTGCCACCAACTCCTGGGCATACGTGGCCCCACTCAAGAGGGAGGTGTATGCCCACGCAGGCGCGACGC
TGGAGGGGAAGATGTATATCACCTGCGGCCGCAGAGGGGAGGATTACCTGAAAGAGACACACTGCTACGA
TCCAGGCAGCAACACTTGGCACACACTGGCTGATGGGCCTGTGCGGCGCGCCTGGCACGGCATGGCAACC
CTCCTCAACAAGCTGTATGTGATCGGGGGCAGCAACAACGATGCCGGATACAGGAGGGACGTGCACCAGG
TGGCCTGCTACAGCTGCACGTCTGGACAGTGGTCATCTGTCTGCCCACTCCCTGCTGGGCACGGTGAGCC
TGGCATTGCTGTGCTGGACAACAGGATCTATGTGTTAGGTGGCCGCTCACACAACCGCGGCAGCCGCACA
GGCTACGTGCACATTTACGATGTGGAGAAGGACTGCTGGGAGGAAGGGCCCCAGCTGGACAACTCCATCT
CAGGCCTGGCGGCCTGTGTGCTCACCCTGCCCCGCTCCCTGCTCCTTGAGCCGCCCCGCGGGACCCCTGA
CCGCAGCCAGGCCGACCCGGACTTTGCCTCTGAGGTGATGAGTGTGTCTGACTGGGAGGAGTTTGACAAC
TCCAGTGAGGACTAG

Translation (634 aa):
MAEEQEFTQLCKLPAQPSHPHCVNNTYRSAQHSQALLRGLLALRDSGILFDVVLVVEGRHIEAHRILLAA
SCDYFRGMFAGGLKEMEQEEVLIHGVSYNAMCQILHFIYTSELELSLSNVQETLVAACQLQIPEIIHFCC
DFLMSWVDEENILDVYRLAELFDLSRLTEQLDTYILKNFVAFSRTDKYRQLPLEKVYSLLSSNRLEVSCE
TEVYEGALLYHYSLEQVQADQISLHEPPKLLETVRFPLMEAEVLQRLHDKLDPSPLRDTVASALMYHRNE
SLQPSLQSPQTELRSDFQCVVGFGGIHSTPSTVLSDQAKYLNPLLGEWKHFTASLAPRMSNQGIAVLNNF
VYLIGGDNNVQGFRAESRCWRYDPRHNRWFQIQSLQQEHADLSVCVVGRYIYAVAGRDYHNDLNAVERYD
PATNSWAYVAPLKREVYAHAGATLEGKMYITCGRRGEDYLKETHCYDPGSNTWHTLADGPVRRAWHGMAT
LLNKLYVIGGSNNDAGYRRDVHQVACYSCTSGQWSSVCPLPAGHGEPGIAVLDNRIYVLGGRSHNRGSRT
GYVHIYDVEKDCWEEGPQLDNSISGLAACVLTLPRSLLLEPPRGTPDRSQADPDFASEVMSVSDWEEFDN
SSED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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