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Report for CCDS13774.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13774.1 Public Homo sapiens 22 TRMT2A 24 110 108 CCDS HistoryNCBI Gene:27037Re-query CCDS DB by CCDS ID:13774.1Re-query CCDS DB by GeneID:27037See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13774.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252136.12 ENSP00000252136.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252136.12Link to Ensembl Protein Viewer:ENSP00000252136.7Re-query CCDS DB by Nucleotide ID:ENST00000252136Re-query CCDS DB by Protein ID:ENSP00000252136
Original member Current member EBI ENST00000403707.7 ENSP00000385807.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403707.7Link to Ensembl Protein Viewer:ENSP00000385807.3Re-query CCDS DB by Nucleotide ID:ENST00000403707Re-query CCDS DB by Protein ID:ENSP00000385807
Original member Current member NCBI NM_022727.6 NP_073564.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022727.6Link to Protein Sequence:NP_073564.3Re-query CCDS DB by Nucleotide ID:NM_022727Re-query CCDS DB by Protein ID:NP_073564Link to BLAST:NP_073564.3
Original member Current member NCBI NM_182984.5 NP_892029.2 Accepted alive Link to Nucleotide Sequence:NM_182984.5Link to Protein Sequence:NP_892029.2Re-query CCDS DB by Nucleotide ID:NM_182984Re-query CCDS DB by Protein ID:NP_892029Link to BLAST:NP_892029.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073564.3 625 Q8IZ69-1 625 100% 0 0
NP_892029.2 625 Q8IZ69-1 625 100% 0 0

Chromosomal Locations for CCDS 13774.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 20112563 20112794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20112911 20113007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20113118 20113234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20113432 20113507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20113686 20113808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20114574 20114685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20114761 20114876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20114965 20115079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20115266 20115447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20115672 20115780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20116038 20116612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20116883 20116906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGAGTGAGAACCTCGACAACGAGGGCCCGAAGCCCATGGAGAGCTGTGGCCAGGAGAGCAGCAGTGCCC
TGAGCTGCCCTACCGTCTCGGTGCCCCCTGCAGCCCCGGCAGCCCTGGAGGAGGTGGAGAAAGAGGGCGC
TGGGGCGGCTACAGGGCCGGGGCCTCAGCCCGGGCTCTACAGCTACATCAGGGATGACTTGTTTACCTCT
GAGATCTTTAAACTGGAGCTGCAGAACGTGCCTCGCCACGCCAGCTTCAGCGACGTCCGGCGCTTCCTGG
GCCGCTTTGGTCTGCAGCCCCACAAAACCAAACTCTTTGGGCAACCACCCTGCGCCTTTGTGACATTCCG
CAGCGCTGCAGAGAGGGACAAGGCCCTGCGCGTTTTGCATGGTGCCCTCTGGAAAGGCCGCCCACTCAGT
GTGCGCCTGGCCCGGCCCAAGGCCGACCCCATGGCCAGGAGGAGGCGACAGGAGGGTGAGAGTGAGCCAC
CAGTAACACGAGTGGCCGACGTGGTGACCCCTCTATGGACAGTGCCCTATGCTGAGCAGCTTGAGCGGAA
GCAGCTGGAGTGCGAGCAGGTGCTGCAGAAACTTGCCAAGGAAATCGGGAGCACCAACCGTGCCTTGCTG
CCCTGGCTGCTCGAGCAGAGGCACAAGCACAACAAGGCCTGCTGCCCGCTGGAGGGGGTCAGGCCATCAC
CCCAGCAGACTGAGTATCGTAATAAGTGTGAGTTTCTGGTTGGCGTCGGGGTGGATGGGGAGGATAACAC
CGTGGGCTGTCGGCTCGGCAAGTACAAGGGCGGGACGTGTGCTGTGGCAGCCCCGTTTGACACCGTGCAC
ATCCCCGAAGCCACCAAGCAGGTGGTGAAGGCCTTCCAGGAGTTCATCCGGTCCACTCCATACTCGGCAT
ACGACCCAGAGACGTACACAGGCCACTGGAAGCAGCTGACTGTGCGCACCAGCCGCCGCCACCAGGCCAT
GGCCATTGCCTACTTCCACCCCCAGAAGCTGAGCCCTGAGGAGCTGGCAGAGCTGAAGACCTCCCTAGCG
CAGCACTTCACAGCAGGGCCAGGCAGGGCCAGTGGAGTGACCTGCCTCTACTTCGTGGAGGAGGGACAGC
GAAAGACTCCTAGCCAGGAGGGCCTGCCCCTGGAGCATGTGGCTGGGGACCGGTGCATCCACGAGGACCT
GCTAGGGCTGACCTTCCGGATCTCTCCACACGCCTTCTTCCAGGTGAACACACCCGCAGCCGAGGTGCTC
TACACAGTCATCCAGGACTGGGCCCAATTGGATGCGGGGAGCATGGTGCTGGACGTGTGCTGTGGCACCG
GCACCATTGGCCTGGCCCTGGCCCGGAAGGTAAAGAGGGTCATTGGGGTCGAGCTATGCCCAGAGGCTGT
GGAGGACGCCCGGGTGAACGCCCAGGACAATGAGTTGAGTAATGTGGAGTTCCACTGCGGGAGGGCCGAG
GACCTGGTGCCCACCCTGGTGAGCAGACTGGCCTCCCAGCACCTCGTGGCCATCCTGGACCCACCCCGTG
CTGGCTTGCATTCCAAGGTGATCCTGGCCATCCGGAGAGCTAAGAACCTCAGGCGGCTGCTGTACGTCTC
ATGCAACCCCCGGGCAGCCATGGGCAACTTTGTGGACCTCTGCAGAGCCCCATCTAACCGGGTGAAGGGC
ATTCCCTTCCGGCCGGTCAAGGCTGTGGCAGTGGACCTGTTCCCGCAGACCCCGCACTGTGAGATGCTCA
TCCTGTTTGAGAGGGTGGAGCACCCCAATGGCACAGGGGTCTTGGGGCCCCACAGCCCTCCAGCTCAACC
CACACCAGGACCCCCAGATAACACCCTACAAGAAACTGGGACCTTCCCCTCATCCTAG

Translation (625 aa):
MSENLDNEGPKPMESCGQESSSALSCPTVSVPPAAPAALEEVEKEGAGAATGPGPQPGLYSYIRDDLFTS
EIFKLELQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKGRPLS
VRLARPKADPMARRRRQEGESEPPVTRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGSTNRALL
PWLLEQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVH
IPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRRHQAMAIAYFHPQKLSPEELAELKTSLA
QHFTAGPGRASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAEVL
YTVIQDWAQLDAGSMVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAE
DLVPTLVSRLASQHLVAILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNPRAAMGNFVDLCRAPSNRVKG
IPFRPVKAVAVDLFPQTPHCEMLILFERVEHPNGTGVLGPHSPPAQPTPGPPDNTLQETGTFPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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