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Report for CCDS13769.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13769.1 Public Homo sapiens 22 RTL10 24 110 108 CCDS HistoryNCBI Gene:79680Re-query CCDS DB by CCDS ID:13769.1Re-query CCDS DB by GeneID:79680See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13769.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328554.9 ENSP00000330596.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328554.9Link to Ensembl Protein Viewer:ENSP00000330596.4Re-query CCDS DB by Nucleotide ID:ENST00000328554Re-query CCDS DB by Protein ID:ENSP00000330596
Original member Current member EBI ENST00000405640.1 ENSP00000384924.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405640.1Link to Ensembl Protein Viewer:ENSP00000384924.1Re-query CCDS DB by Nucleotide ID:ENST00000405640Re-query CCDS DB by Protein ID:ENSP00000384924
Original member Current member EBI ENST00000407472.5 ENSP00000386111.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407472.5Link to Ensembl Protein Viewer:ENSP00000386111.1Re-query CCDS DB by Nucleotide ID:ENST00000407472Re-query CCDS DB by Protein ID:ENSP00000386111
Original member Current member NCBI NM_024627.6 NP_078903.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024627.6Link to Protein Sequence:NP_078903.3Re-query CCDS DB by Nucleotide ID:NM_024627Re-query CCDS DB by Protein ID:NP_078903Link to BLAST:NP_078903.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078903.3 364 Q7L3V2 364 100% 0 0

Chromosomal Locations for CCDS 13769.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 19851167 19852261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGCCTCGTGGCCGGTGCCGTCAGCAGGGCCCTCGCATTCCCATCTGGGCAGCCGCCAATTATGCCAACG
CACATCCATGGCAGCAGATGGACAAGGCGTCTCCTGGGGTGGCATACACCCCCCTTGTGGATCCCTGGAT
TGAGCGGCCCTGCTGTGGGGACACCGTGTGTGTGCGAACGACCATGGAGCAGAAGAGCACAGCTAGTGGC
ACTTGTGGCGGTAAACCTGCAGAAAGGGGTCCCCTAGCTGGGCACATGCCCAGCTCCCGACCCCACAGGG
TGGACTTCTGCTGGGTACCAGGCTCAGACCCAGGCACCTTTGATGGCTCCCCGTGGCTACTGGACCGCTT
CTTGGCCCAGCTGGGCGATTACATGTCCTTCCACTTTGAGCACTATCAGGACAACATCAGCCGTGTCTGC
GAGATCCTCAGGCGCCTAACAGGCCGAGCCCAGGCCTGGGCAGCCCCCTACCTTGATGGGGACCTGCCCC
TGCCTGACGATTACGAGCTCTTCTGCCAGGATCTCAAGGAAGTTGTTCAAGACCCGAACAGTTTTGCTGA
GTACCATGCTGTGGTTACCTGTCCCCTGCCCCTGGCCTCCAGCCAGCTGCCAGTGGCCCCTCAGCTGCCT
GTGGTGAGGCAATACTTAGCTAGGTTCTTAGAGGGCCTGGCACTCGACATGGGTACTGCCCCCAGGTCTT
TACCAGCCGCCATGGCCACCCCTGCTGTGTCTGGGTCCAACTCTGTATCTAGAAGTGCTCTGTTCGAGCA
GCAGCTGACCAAGGAGAGCACCCCTGGGCCCAAGGAGCCCCCAGTCCTGCCCAGTTCTACATGTAGCTCC
AAGCCTGGTCCTGTGGAACCAGCCTCTTCCCAGCCAGAGGAGGCAGCCCCCACACCTGTCCCTAGACTGT
CGGAGTCAGCTAATCCTCCTGCCCAGAGACCAGACCCAGCTCATCCAGGAGGTCCAAAACCCCAGAAAAC
AGAGGAGGAGGTTTTGGAGACAGAGGGAGACCAGGAGGTGTCCTTAGGTACCCCACAGGAGGTGGTGGAG
GCCCCGGAGACCCCAGGAGAGCCACCACTTTCTCCTGGGTTCTGA

Translation (364 aa):
MPRGRCRQQGPRIPIWAAANYANAHPWQQMDKASPGVAYTPLVDPWIERPCCGDTVCVRTTMEQKSTASG
TCGGKPAERGPLAGHMPSSRPHRVDFCWVPGSDPGTFDGSPWLLDRFLAQLGDYMSFHFEHYQDNISRVC
EILRRLTGRAQAWAAPYLDGDLPLPDDYELFCQDLKEVVQDPNSFAEYHAVVTCPLPLASSQLPVAPQLP
VVRQYLARFLEGLALDMGTAPRSLPAAMATPAVSGSNSVSRSALFEQQLTKESTPGPKEPPVLPSSTCSS
KPGPVEPASSQPEEAAPTPVPRLSESANPPAQRPDPAHPGGPKPQKTEEEVLETEGDQEVSLGTPQEVVE
APETPGEPPLSPGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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