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Report for CCDS13738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13738.1 Public Homo sapiens 22 CCT8L2 24 110 108 CCDS HistoryNCBI Gene:150160Re-query CCDS DB by CCDS ID:13738.1Re-query CCDS DB by GeneID:150160See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13738.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359963.4 ENSP00000353048.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359963.4Link to Ensembl Protein Viewer:ENSP00000353048.3Re-query CCDS DB by Nucleotide ID:ENST00000359963Re-query CCDS DB by Protein ID:ENSP00000353048
Original member Current member NCBI NM_014406.5 NP_055221.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014406.5Link to Protein Sequence:NP_055221.1Re-query CCDS DB by Nucleotide ID:NM_014406Re-query CCDS DB by Protein ID:NP_055221Link to BLAST:NP_055221.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055221.1 557 Q96SF2 557 100% 0 0

Chromosomal Locations for CCDS 13738.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 16590877 16592550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGACAGCACAGTCCCTTCAGCCCTGGAGCTGCCCCAGCGGCTGGCACTGAACCCAAGGGAGAGCCCGA
GGAGTCCAGAAGAGGAGGAGCCCCACCTGCTGAGCAGCTTGGCTGCAGTCCAGACCCTGGCCAGTGTCAT
CCGGCCTTGCTATGGCCCCCACGGCCGGCAGAAGTTCCTGGTGACCATGAAAGGAGAAACAGTGTGCACG
GGGTGTGCCACTGCCATCCTCAGGGCCCTGGAGCTGGAGCACCCAGCAGCATGGCTCCTCCGGGAAGCAG
GACAAACCCAGGCAGAGAATAGTGGGGACGGCACAGCCTTCGTGGTTCTGCTGACGGAAGCCTTGCTGGA
ACAGGCAGAGCAGCTGCTGAAGGCTGGCCTGCCTCGCCCGCAGCTCCGGGAGGCCTACGCCACGGCCACT
GCAGAGGTCCTGGCCACACTGCCCTCCCTGGCCATCCAATCTCTGGGGCCTTTGGAAGATCCATCCTGGG
CCCTCCATTCTGTGATGAATACCCACACCCTGTCCCCCATGGACCACTTGACCAAGCTGGTGGCCCACGC
CTGCTGGGCTATCAAGGAACTAGACGGCAGCTTCAAGCCTGAGCGTGTTGGGGTGTGCGCGCTGCCCGGG
GGGACACTGGAGGATTCCTGCCTCCTCCCGGGGTTAGCAATATCTGGGAAGCTCTGTGGGCAAATGGCCA
CAGTGTTAAGTGGTGCCAGGGTGGCTCTCTTTGCTTGCCCCTTTGGTCCTGCCCATCCAAATGCACCAGC
AACGGCCCGTCTTTCTAGTCCTGCTGATCTAGCTCAATTTAGTAAAGGAAGCGATCAATTACTAGAAAAG
CAAGTAGGCCAGCTAGCAGCTGCAGGAATTAATGTGGCAGTGGTGTTGGGGGAGGTCGACGAGGAGACCC
TCACACTGGCGGACAAGTATGGCATCGTGGTGATTCAAGCTAGGTCTTGGATGGAGATCATTTACCTGAG
TGAGGTGTTGGACACACCTCTGCTGCCTCGTCTGCTCCCTCCCCAGAGGCCAGGCAAGTGCCAGAGGGTT
TACAGGCAGGAGCTGGGAGATGGTTTGGCTGTGGTATTTGAATGGGAATGTACAGGCACACCTGCCCTCA
CTGTGGTTCTCAGGGGAGCCACCACCCAGGGGCTGCGGAGTGCAGAGCAGGCCGTCTACCACGGCATTGA
TGCCTATTTCCAGCTATGTCAAGATCCCAGACTGATTCCAGGAGCTGGGGCCACAGAAATGGCTTTGGCA
AAAATGCTTTCTGATAAAGGAAGCAGATTGGAAGGGCCCAGTGGGCCTGCATTCCTAGCATTTGCCTGGG
CCCTGAAGTATCTTCCTAAAACTTTGGCAGAGAATGCAGGCTTAGCTGTCTCAGACGTGATGGCAGAAAT
GAGTGGAGTGCACCAAGGTGGGAACCTCCTAATGGGTGTGGGAACTGAAGGGATAATAAATGTGGCCCAG
GAAGGGGTGTGGGACACCCTAATAGTCAAAGCCCAAGGATTTCGAGCAGTGGCTGAGGTGGTGCTACAGC
TCGTGACTGTAGATGAAATCGTAGTGGCCAAGAAAAGTCCCACACATCAGGAGATCTGGAATCCTGACTC
TAAGAAGACAAAGAAACACCCACCTCCTGTGGAAACAAAAAAAATCCTTGGATTGAATAACTAG

Translation (557 aa):
MDSTVPSALELPQRLALNPRESPRSPEEEEPHLLSSLAAVQTLASVIRPCYGPHGRQKFLVTMKGETVCT
GCATAILRALELEHPAAWLLREAGQTQAENSGDGTAFVVLLTEALLEQAEQLLKAGLPRPQLREAYATAT
AEVLATLPSLAIQSLGPLEDPSWALHSVMNTHTLSPMDHLTKLVAHACWAIKELDGSFKPERVGVCALPG
GTLEDSCLLPGLAISGKLCGQMATVLSGARVALFACPFGPAHPNAPATARLSSPADLAQFSKGSDQLLEK
QVGQLAAAGINVAVVLGEVDEETLTLADKYGIVVIQARSWMEIIYLSEVLDTPLLPRLLPPQRPGKCQRV
YRQELGDGLAVVFEWECTGTPALTVVLRGATTQGLRSAEQAVYHGIDAYFQLCQDPRLIPGAGATEMALA
KMLSDKGSRLEGPSGPAFLAFAWALKYLPKTLAENAGLAVSDVMAEMSGVHQGGNLLMGVGTEGIINVAQ
EGVWDTLIVKAQGFRAVAEVVLQLVTVDEIVVAKKSPTHQEIWNPDSKKTKKHPPPVETKKILGLNN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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