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Report for CCDS1373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1373.1 Public Homo sapiens 1 BRINP3 24 110 108 CCDS HistoryNCBI Gene:339479Re-query CCDS DB by CCDS ID:1373.1Re-query CCDS DB by GeneID:339479See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1373.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367462.5 ENSP00000356432.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367462.5Link to Ensembl Protein Viewer:ENSP00000356432.3Re-query CCDS DB by Nucleotide ID:ENST00000367462Re-query CCDS DB by Protein ID:ENSP00000356432
Original member Current member NCBI NM_199051.3 NP_950252.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_199051.3Link to Protein Sequence:NP_950252.1Re-query CCDS DB by Nucleotide ID:NM_199051Re-query CCDS DB by Protein ID:NP_950252Link to BLAST:NP_950252.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_950252.1 766 Q76B58-1 766 100% 0 0

Chromosomal Locations for CCDS 1373.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 190098018 190099134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190160668 190160890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190226082 190226318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190234372 190234477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190264865 190265055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190281560 190281750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190454655 190454890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2301 nt):
ATGATATGGCGAAGCAGAGCTGGTGCTGAATTGTTCTCTCTGATGGCTCTATGGGAGTGGATAGCACTGA
GTCTTCATTGCTGGGTTTTAGCGGTTGCTGCTGTTTCGGATCAGCATGCCACAAGCCCCTTCGACTGGCT
CCTCTCTGATAAGGGACCCTTCCATCGCTCACAGGAATACACAGATTTTGTGGACAGAAGCCGGCAGGGA
TTTAGCACAAGATACAAGATATACAGGGAGTTTGGCCGCTGGAAAGTAAATAACCTTGCAGTTGAGAGAA
GAAATTTCCTTGGCTCTCCTCTGCCTCTTGCCCCTGAATTCTTCCGCAACATAAGACTTTTGGGACGTCG
ACCTACCCTTCAGCAAATCACAGAAAACCTTATCAAGAAATATGGGACACATTTCTTGCTATCTGCTACT
CTGGGAGGAGAGGAGTCACTCACAATTTTTGTGGACAAGCGGAAGTTGAGCAAACGAGCTGAAGGAAGTG
ATTCCACCACCAATAGCTCTTCGGTCACTCTGGAGACGCTACATCAGCTAGCCGCTTCTTATTTCATTGA
CAGGGACAGCACCCTTCGGAGACTTCACCACATTCAAATTGCATCCACTGCCATAAAGGTAACAGAAACA
CGGACTGGTCCTCTTGGCTGCAGTAACTATGACAACCTAGATTCTGTCAGTTCTGTTCTGGTTCAGAGTC
CTGAGAATAAGATTCAGTTGCAAGGGCTTCAAGTACTTCTCCCAGACTATCTTCAGGAACGTTTTGTACA
AGCAGCTTTGAGCTACATTGCTTGCAATTCAGAGGGAGAGTTTATCTGCAAGGAAAATGACTGCTGGTGT
CACTGTGGTCCCAAATTTCCAGAATGCAACTGCCCCTCCATGGACATTCAAGCCATGGAAGAGAATCTTC
TTCGAATAACTGAAACCTGGAAAGCTTACAACAGTGACTTTGAGGAATCAGATGAATTCAAGTTATTTAT
GAAAAGGCTACCTATGAATTATTTCCTCAACACATCTACTATAATGCATTTGTGGACAATGGATTCTAAT
TTTCAGCGCCGTTATGAACAACTGGAGAACAGCATGAAACAACTTTTCCTAAAGGCGCAGAAAATTGTAC
ACAAGCTTTTTAGCCTTAGCAAGAGGTGTCATAAACAACCCCTCATCAGCCTGCCAAGACAAAGAACCTC
AACCTACTGGCTTACTCGCATCCAGTCTTTTCTCTACTGCAATGAGAACGGCCTCCTAGGCAGCTTTTCA
GAAGAGACGCACTCGTGCACGTGTCCGAATGACCAGGTGGTCTGCACCGCGTTCCTGCCCTGCACAGTGG
GAGACGCCTCTGCCTGCCTGACATGCGCACCAGACAACCGCACCCGCTGCGGCACCTGCAACACCGGCTA
CATGCTCAGCCAGGGGCTCTGCAAGCCTGAAGTCGCCGAGTCCACCGATCACTATATTGGCTTTGAAACT
GACCTGCAAGATCTCGAGATGAAATATCTGCTGCAGAAAACGGACAGACGAATAGAAGTCCATGCCATTT
TTATCAGCAATGACATGCGCCTCAATAGCTGGTTTGATCCCTCCTGGCGTAAGCGGATGCTCCTCACCTT
GAAGAGCAATAAGTACAAGTCAAGTCTGGTCCATATGATTTTGGGTCTCTCTTTACAGATTTGCTTAACT
AAAAACAGCACCTTGGAGCCAGTGTTGGCTGTTTATGTCAATCCCTTCGGAGGCAGCCACTCTGAGAGCT
GGTTTATGCCTGTGAATGAAAACAGCTTTCCAGACTGGGAGCGGACTAAGTTGGACCTACCCCTGCAGTG
TTATAACTGGACATTAACTCTGGGGAACAAATGGAAGACATTTTTTGAGACAGTACACATCTACCTGAGA
AGTCGCATCAAGTCCAATGGTCCCAATGGTAATGAGAGCATTTACTATGAACCTCTGGAGTTTATTGACC
CTTCCCGGAACCTGGGCTATATGAAAATCAATAACATTCAAGTGTTTGGCTACAGCATGCACTTTGACCC
TGAAGCAATTCGGGACCTGATTTTGCAGCTGGACTACCCCTATACTCAGGGATCCCAGGATTCAGCACTT
TTGCAACTACTAGAGATCAGAGACCGTGTAAATAAACTCTCCCCACCTGGTCAGCGTCGTCTAGATCTTT
TCTCTTGCTTGCTTCGTCATAGACTCAAGCTGTCTACTAGTGAGGTGGTGAGGATCCAATCTGCTCTGCA
GGCGTTTAATGCCAAATTGCCAAACACAATGGATTATGACACGACCAAATTATGTAGTTAA

Translation (766 aa):
MIWRSRAGAELFSLMALWEWIALSLHCWVLAVAAVSDQHATSPFDWLLSDKGPFHRSQEYTDFVDRSRQG
FSTRYKIYREFGRWKVNNLAVERRNFLGSPLPLAPEFFRNIRLLGRRPTLQQITENLIKKYGTHFLLSAT
LGGEESLTIFVDKRKLSKRAEGSDSTTNSSSVTLETLHQLAASYFIDRDSTLRRLHHIQIASTAIKVTET
RTGPLGCSNYDNLDSVSSVLVQSPENKIQLQGLQVLLPDYLQERFVQAALSYIACNSEGEFICKENDCWC
HCGPKFPECNCPSMDIQAMEENLLRITETWKAYNSDFEESDEFKLFMKRLPMNYFLNTSTIMHLWTMDSN
FQRRYEQLENSMKQLFLKAQKIVHKLFSLSKRCHKQPLISLPRQRTSTYWLTRIQSFLYCNENGLLGSFS
EETHSCTCPNDQVVCTAFLPCTVGDASACLTCAPDNRTRCGTCNTGYMLSQGLCKPEVAESTDHYIGFET
DLQDLEMKYLLQKTDRRIEVHAIFISNDMRLNSWFDPSWRKRMLLTLKSNKYKSSLVHMILGLSLQICLT
KNSTLEPVLAVYVNPFGGSHSESWFMPVNENSFPDWERTKLDLPLQCYNWTLTLGNKWKTFFETVHIYLR
SRIKSNGPNGNESIYYEPLEFIDPSRNLGYMKINNIQVFGYSMHFDPEAIRDLILQLDYPYTQGSQDSAL
LQLLEIRDRVNKLSPPGQRRLDLFSCLLRHRLKLSTSEVVRIQSALQAFNAKLPNTMDYDTTKLCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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