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Report for CCDS13494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13494.1 Public Homo sapiens 20 OSBPL2 24 110 108 CCDS HistoryNCBI Gene:9885Re-query CCDS DB by CCDS ID:13494.1Re-query CCDS DB by GeneID:9885See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13494.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358053.3 ENSP00000350755.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358053.3Link to Ensembl Protein Viewer:ENSP00000350755.2Re-query CCDS DB by Nucleotide ID:ENST00000358053Re-query CCDS DB by Protein ID:ENSP00000350755
Original member Current member NCBI NM_014835.5 NP_055650.1 Accepted alive Link to Nucleotide Sequence:NM_014835.5Link to Protein Sequence:NP_055650.1Re-query CCDS DB by Nucleotide ID:NM_014835Re-query CCDS DB by Protein ID:NP_055650Link to BLAST:NP_055650.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055650.1 468 Q9H1P3-2 468 100% 0 0

Chromosomal Locations for CCDS 13494.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 62256185 62256221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62260017 62260125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62263616 62263691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62272125 62272259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62273309 62273406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62279157 62279339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62281058 62281165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62281790 62281879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62284046 62284169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62286583 62286711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62289207 62289330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62291703 62291793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62293785 62293887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGAACGGAGAGGAAGAATTCTTTGATGCCGTCACAGAGGCAAATCAGAAAGTCACGGGAATGATTGACT
TAGACACCAGCAAAAATAATAGGATTGGGAAAACTGGGGAGAGGCCCTCTCAAGAGAACGGAATTCAGAA
ACACAGGACATCGCTGCCGGCTCCCATGTTCAGCAGAAGCGACTTCAGCGTGTGGACCATCCTGAAGAAG
TGTGTTGGCCTGGAGCTGTCCAAGATCACGATGCCAATCGCCTTCAACGAGCCTCTGAGCTTCTTGCAGC
GGATCACGGAGTACATGGAGCACGTGTACCTCATCCACAGGGCCTCCTGCCAGCCCCAGCCCCTGGAGAG
GATGCAGTCTGTGGCTGCTTTTGCTGTTTCGGCTGTGGCTTCCCAGTGGGAGAGGACCGGCAAACCATTT
AATCCACTCTTGGGAGAAACGTATGAATTAATCAGGGAAGATTTAGGATTCAGATTTATATCGGAACAGG
TCAGTCACCACCCCCCCATCAGTGCGTTCCACTCGGAAGGTCTCAACCATGACTTCCTGTTCCATGGCTC
CATCTACCCCAAGCTCAAGTTCTGGGGCAAAAGCGTGGAGGCGGAGCCCCGAGGCACCATCACCCTGGAG
CTGCTCAAACATAATGAAGCCTACACCTGGACCAACCCCACCTGCTGCGTCCACAACGTCATCATCGGGA
AGCTGTGGATAGAGCAGTATGGGACAGTGGAGATTTTAAACCACAGAACTGGACATAAGTGTGTGCTTCA
CTTTAAACCGTGTGGATTATTTGGAAAAGAACTTCACAAGGTGGAAGGACACATTCAAGACAAAAACAAA
AAGAAGCTCTTTATGATCTATGGCAAATGGACGGAATGTTTGTGGGGCATAGATCCTGTTTCGTATGAAT
CCTTCAAGAAGCAGGAGAGGAGAGGTGACCACCTGAGAAAGGCCAAGCTGGATGAAGACTCCGGGAAGGC
TGACAGCGACGTGGCTGACGACGTGCCTGTGGCCCAGGAGACCGTGCAGGTCATTCCTGGCAGCAAGCTG
CTCTGGAGGATCAACACCCGGCCCCCCAACTCTGCCCAGATGTATAATTTCACCAGTTTCACTGTGAGCC
TCAACGAGCTGGAGACAGGCATGGAGAAGACCCTGCCACCCACGGACTGCCGCCTGCGCCCTGACATCCG
CGGCATGGAGAATGGCAACATGGATCTGGCCAGCCAGGAGAAGGAGCGGCTGGAGGAGAAGCAGAGAGAA
GCACGGAGGGAGCGGGCCAAGGAGGAGGCAGAGTGGCAGACGAGGTGGTTCTACCCAGGCAATAACCCCT
ACACTGGGACCCCCGACTGGTTGTATGCAGGGGATTACTTTGAGCGGAATTTCTCCGACTGCCCAGATAT
CTACTGA

Translation (468 aa):
MNGEEEFFDAVTEANQKVTGMIDLDTSKNNRIGKTGERPSQENGIQKHRTSLPAPMFSRSDFSVWTILKK
CVGLELSKITMPIAFNEPLSFLQRITEYMEHVYLIHRASCQPQPLERMQSVAAFAVSAVASQWERTGKPF
NPLLGETYELIREDLGFRFISEQVSHHPPISAFHSEGLNHDFLFHGSIYPKLKFWGKSVEAEPRGTITLE
LLKHNEAYTWTNPTCCVHNVIIGKLWIEQYGTVEILNHRTGHKCVLHFKPCGLFGKELHKVEGHIQDKNK
KKLFMIYGKWTECLWGIDPVSYESFKKQERRGDHLRKAKLDEDSGKADSDVADDVPVAQETVQVIPGSKL
LWRINTRPPNSAQMYNFTSFTVSLNELETGMEKTLPPTDCRLRPDIRGMENGNMDLASQEKERLEEKQRE
ARRERAKEEAEWQTRWFYPGNNPYTGTPDWLYAGDYFERNFSDCPDIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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