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Report for CCDS13432.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13432.3 Public Homo sapiens 20 BCAS4 24 110 108 CCDS HistoryNCBI Gene:55653Re-query CCDS DB by CCDS ID:13432.3Re-query CCDS DB by GeneID:55653See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13432.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371608.8 ENSP00000360669.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371608.8Link to Ensembl Protein Viewer:ENSP00000360669.3Re-query CCDS DB by Nucleotide ID:ENST00000371608Re-query CCDS DB by Protein ID:ENSP00000360669
Original member Current member NCBI NM_198799.4 NP_942094.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198799.4Link to Protein Sequence:NP_942094.3Re-query CCDS DB by Nucleotide ID:NM_198799Re-query CCDS DB by Protein ID:NP_942094Link to BLAST:NP_942094.3

Chromosomal Locations for CCDS 13432.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 50795084 50795173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50818211 50818282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50830279 50830380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50841766 50841900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50876486 50876608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGA
CCCCCGAGCCTGGGGCCGAGGCGAAGGAGGTGGAGGAGACCATCGAGGGCATGCTCCTCAGGCTGGAAGA
GTTTTGCAGCCTGGCTGACCTGATCAGGAGTGATACTTCACAGATCCTGGAGGAAAACATCCCAGTCCTT
AAGGCCAAACTGACAGAAATGCGTGGCATCTATGCCAAAGTGGACCGGCTAGAGGCCTTCGTCAAGATGG
TTGGACACCACGTCGCCTTCCTGGAAGCAGACGTGCTTCAGGCTGAGCGGGACCATGGGGCCTTCCCTCA
GGCCCTGCGGAGGTGGCTGGGATCCGCAGGGCTCCCCTCCTTCAGGAACAAGTCACCTGCACCGGTGCCC
GTGACGTACGAGCTGCCCACACTGTATAGGACGGAGGACTATTTTCCTGTGGACGCCGGGGAAGCACAGC
ACCACCCCCGCACCTGCCCTCGGCCTTTGTGA

Translation (173 aa):
MLLVDADQPEPMRSGARELALFLTPEPGAEAKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVL
KAKLTEMRGIYAKVDRLEAFVKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNKSPAPVP
VTYELPTLYRTEDYFPVDAGEAQHHPRTCPRPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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