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Report for CCDS13396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13396.1 Public Homo sapiens 20 SLC35C2 24 110 108 CCDS HistoryNCBI Gene:51006Re-query CCDS DB by CCDS ID:13396.1Re-query CCDS DB by GeneID:51006See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13396.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000243896.6 ENSP00000243896.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000243896.6Link to Ensembl Protein Viewer:ENSP00000243896.2Re-query CCDS DB by Nucleotide ID:ENST00000243896Re-query CCDS DB by Protein ID:ENSP00000243896
Original member Current member EBI ENST00000372227.5 ENSP00000361301.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372227.5Link to Ensembl Protein Viewer:ENSP00000361301.1Re-query CCDS DB by Nucleotide ID:ENST00000372227Re-query CCDS DB by Protein ID:ENSP00000361301
Original member Current member EBI ENST00000372230.10 ENSP00000361304.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372230.10Link to Ensembl Protein Viewer:ENSP00000361304.5Re-query CCDS DB by Nucleotide ID:ENST00000372230Re-query CCDS DB by Protein ID:ENSP00000361304
Original member Current member NCBI NM_001281460.2 NP_001268389.1 Accepted alive Link to Nucleotide Sequence:NM_001281460.2Link to Protein Sequence:NP_001268389.1Re-query CCDS DB by Nucleotide ID:NM_001281460Re-query CCDS DB by Protein ID:NP_001268389Link to BLAST:NP_001268389.1
Original member Current member NCBI NM_015945.12 NP_057029.8 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015945.12Link to Protein Sequence:NP_057029.8Re-query CCDS DB by Nucleotide ID:NM_015945Re-query CCDS DB by Protein ID:NP_057029Link to BLAST:NP_057029.8
Original member Current member NCBI NM_173179.4 NP_775271.1 Accepted alive Link to Nucleotide Sequence:NM_173179.4Link to Protein Sequence:NP_775271.1Re-query CCDS DB by Nucleotide ID:NM_173179Re-query CCDS DB by Protein ID:NP_775271Link to BLAST:NP_775271.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268389.1 365 Q9NQQ7-1 365 100% 0 0
NP_057029.8 365 Q9NQQ7-1 365 100% 0 0
NP_775271.1 365 Q9NQQ7-1 365 100% 0 0

Chromosomal Locations for CCDS 13396.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 46350394 46350524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46350761 46350890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46352051 46352226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46354882 46354965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46355073 46355241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46355802 46355874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46356574 46356637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46357623 46357773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46358387 46358506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGGGGAGGTGGGCCCTCGATGTGGCCTTTTTGTGGAAGGCGGTGTTGACCCTGGGGCTGGTGCTTCTCT
ACTACTGCTTCTCCATCGGCATCACCTTCTACAACAAGTGGCTGACAAAGAGCTTCCATTTCCCCCTCTT
CATGACGATGCTGCACCTGGCCGTGATCTTCCTCTTCTCCGCCCTGTCCAGGGCGCTGGTTCAGTGCTCC
AGCCACAGGGCCCGTGTGGTGCTGAGCTGGGCCGACTACCTCAGAAGAGTGGCTCCCACAGCTCTGGCGA
CGGCGCTTGACGTGGGCTTGTCCAACTGGAGCTTCCTGTATGTCACCGTCTCGCTGTACACAATGACCAA
ATCCTCAGCTGTCCTCTTCATCTTGATCTTCTCTCTGATCTTCAAGCTGGAGGAGCTGCGCGCGGCACTG
GTCCTGGTGGTCCTCCTCATCGCCGGGGGTCTCTTCATGTTCACCTACAAGTCCACACAGTTCAACGTGG
AGGGCTTCGCCTTGGTGCTGGGGGCCTCGTTCATCGGTGGCATTCGCTGGACCCTCACCCAGATGCTCCT
GCAGAAGGCTGAACTCGGCCTCCAGAATCCCATCGACACCATGTTCCACCTGCAGCCACTCATGTTCCTG
GGGCTCTTCCCTCTCTTTGCTGTATTTGAAGGTCTCCATTTGTCCACATCTGAGAAAATCTTCCGTTTCC
AGGACACAGGGCTGCTCCTGCGGGTACTTGGGAGCCTCTTCCTTGGCGGGATTCTCGCCTTTGGTTTGGG
CTTCTCTGAGTTCCTCCTGGTCTCCAGAACCTCCAGCCTCACTCTCTCCATTGCCGGCATTTTTAAGGAA
GTCTGCACTTTGCTGTTGGCAGCTCATCTGCTGGGCGATCAGATCAGCCTCCTGAACTGGCTGGGCTTCG
CCCTCTGCCTCTCGGGAATATCCCTCCACGTTGCCCTCAAAGCCCTGCATTCCAGAGGTGATGGTGGCCC
CAAGGCCTTGAAGGGGCTGGGCTCCAGCCCCGACCTGGAGCTGCTGCTCCGGAGCAGCCAGCGGGAGGAA
GGTGACAATGAGGAGGAGGAGTACTTTGTGGCCCAGGGGCAGCAGTGA

Translation (365 aa):
MGRWALDVAFLWKAVLTLGLVLLYYCFSIGITFYNKWLTKSFHFPLFMTMLHLAVIFLFSALSRALVQCS
SHRARVVLSWADYLRRVAPTALATALDVGLSNWSFLYVTVSLYTMTKSSAVLFILIFSLIFKLEELRAAL
VLVVLLIAGGLFMFTYKSTQFNVEGFALVLGASFIGGIRWTLTQMLLQKAELGLQNPIDTMFHLQPLMFL
GLFPLFAVFEGLHLSTSEKIFRFQDTGLLLRVLGSLFLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKE
VCTLLLAAHLLGDQISLLNWLGFALCLSGISLHVALKALHSRGDGGPKALKGLGSSPDLELLLRSSQREE
GDNEEEEYFVAQGQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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