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Report for CCDS13392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13392.1 Public Homo sapiens 20 NCOA5 24 110 108 CCDS HistoryNCBI Gene:57727Re-query CCDS DB by CCDS ID:13392.1Re-query CCDS DB by GeneID:57727See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13392.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290231.11 ENSP00000290231.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000290231.11Link to Ensembl Protein Viewer:ENSP00000290231.6Re-query CCDS DB by Nucleotide ID:ENST00000290231Re-query CCDS DB by Protein ID:ENSP00000290231
Original member Current member NCBI NM_020967.3 NP_066018.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020967.3Link to Protein Sequence:NP_066018.1Re-query CCDS DB by Nucleotide ID:NM_020967Re-query CCDS DB by Protein ID:NP_066018Link to BLAST:NP_066018.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066018.1 579 Q9HCD5 579 100% 0 0

Chromosomal Locations for CCDS 13392.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 46062300 46062889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46063360 46063680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46065029 46065228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46067055 46067181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46068502 46068638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46070210 46070536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46079387 46079424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGAATACGGCTCCATCAAGACCCAGCCCCACACGAAGGGATCCATATGGCTTTGGAGACAGTCGAGATT
CAAGGCGTGATCGATCCCCAATTCGAGGAAGTCCAAGGAGAGAGCCCAGGGATGGCAGAAATGGCCGGGA
TGCCCGGGACAGCAGAGACATTCGAGACCCCCGAGACTTGCGGGACCACAGACATAGTAGAGATTTGCGG
GATCACAGAGACAGCAGGAGTGTGCGCGACGTTCGGGACGTGAGGGATCTTAGAGACTTTCGTGATCTAA
GAGACTCTAGGGATTTTCGAGATCAGCGAGACCCCATGTACGACAGATACAGAGACATGAGAGACTCCCG
AGATCCTATGTACAGGAGAGAAGGCTCTTATGACCGATACCTACGAATGGATGACTATTGCAGGAGAAAG
GATGACTCTTATTTTGACCGTTACAGAGATAGCTTTGATGGACGGGGCCCTCCAGGCCCAGAAAGTCAGT
CTCGTGCAAAAGAGCGTTTGAAACGTGAGGAACGGCGTAGAGAAGAGCTTTATCGTCAATATTTTGAGGA
AATCCAGAGACGCTTTGATGCCGAAAGGCCCGTTGATTGTTCTGTGATTGTGGTCAACAAACAGACAAAA
GACTATGCTGAGTCTGTGGGGCGGAAGGTGCGAGACCTGGGCATGGTAGTGGACTTGATCTTCCTTAACA
CAGAAGTGTCACTGTCACAAGCCTTGGAGGATGTTAGCAGGGGAGGTTCTCCTTTTGCTATTGTCATCAC
CCAGCAACACCAGATTCACCGCTCCTGCACAGTCAACATCATGTTTGGAACCCCGCAAGAGCATCGCAAC
ATGCCCCAAGCAGATGCCATGGTGCTGGTGGCCAGAAATTATGAGCGTTACAAGAATGAGTGCCGGGAGA
AGGAACGTGAGGAGATTGCCAGACAGGCAGCCAAGATGGCCGATGAAGCCATCCTGCAGGAAAGAGAGAG
AGGAGGCCCTGAGGAGGGAGTGCGTGGGGGCCACCCTCCAGCCATCCAGAGCCTCATCAACCTGCTGGCA
GACAACAGGTACCTCACTGCTGAAGAGACTGACAAGATCATCAACTACCTGCGAGAGCGGAAGGAGCGGC
TGATGAGGAGCAGCACCGACTCTCTGCCTGGCCCGATTTCCCGCCAACCACTCGGGGCGACCTCGGGTGC
CTCGCTGAAGACACAGCCAAGCTCCCAACCGCTCCAGAGCGGCCAAGTGCTCCCCTCTGCTACACCCACT
CCATCTGCACCCCCCACCTCCCAGCAAGAGCTTCAGGCCAAAATCCTCAGCCTCTTCAATAGTGGCACAG
TGACGGCCAATAGCAGCTCTGCATCCCCCTCGGTTGCTGCCGGAAACACCCCAAACCAGAATTTTTCCAC
AGCAGCAAACAGCCAGCCTCAACAAAGATCACAGGCTTCTGGCAATCAGCCTCCAAGCATTTTGGGACAG
GGAGGATCTGCTCAGAACATGGGCCCCAGACCTGGGGCTCCTTCCCAAGGGCTTTTTGGCCAGCCTTCCA
GTCGCCTGGCACCTGCTAGCAACATGACTAGCCAGAGGCCTGTGTCTTCCACAGGTATCAACTTTGACAA
TCCAAGTGTACAGAAGGCTCTGGATACCCTGATCCAGAGTGGCCCTGCTCTCTCCCACCTGGTTAGCCAG
ACCACAGCACAGATGGGGCAGCCACAGGCCCCCATGGGATCTTACCAGAGGCATTACTGA

Translation (579 aa):
MNTAPSRPSPTRRDPYGFGDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLR
DHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRK
DDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVDCSVIVVNKQTK
DYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRN
MPQADAMVLVARNYERYKNECREKEREEIARQAAKMADEAILQERERGGPEEGVRGGHPPAIQSLINLLA
DNRYLTAEETDKIINYLRERKERLMRSSTDSLPGPISRQPLGATSGASLKTQPSSQPLQSGQVLPSATPT
PSAPPTSQQELQAKILSLFNSGTVTANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQASGNQPPSILGQ
GGSAQNMGPRPGAPSQGLFGQPSSRLAPASNMTSQRPVSSTGINFDNPSVQKALDTLIQSGPALSHLVSQ
TTAQMGQPQAPMGSYQRHY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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