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Report for CCDS13375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13375.1 Public Homo sapiens 20 TNNC2 24 110 108 CCDS HistoryNCBI Gene:7125Re-query CCDS DB by CCDS ID:13375.1Re-query CCDS DB by GeneID:7125See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13375.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372555.8 ENSP00000361636.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372555.8Link to Ensembl Protein Viewer:ENSP00000361636.3Re-query CCDS DB by Nucleotide ID:ENST00000372555Re-query CCDS DB by Protein ID:ENSP00000361636
Original member Current member NCBI NM_003279.3 NP_003270.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003279.3Link to Protein Sequence:NP_003270.1Re-query CCDS DB by Nucleotide ID:NM_003279Re-query CCDS DB by Protein ID:NP_003270Link to BLAST:NP_003270.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003270.1 160 P02585 160 100% 0 0

Chromosomal Locations for CCDS 13375.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 45823348 45823379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45823991 45824127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45824292 45824406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45824495 45824638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45824783 45824834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45827246 45827248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGACGGACCAGCAGGCTGAGGCCAGGTCCTACCTCAGCGAAGAGATGATCGCTGAGTTCAAGGCTGCCT
TTGACATGTTTGATGCTGATGGTGGTGGGGACATCAGCGTCAAGGAGTTGGGCACGGTGATGAGGATGCT
GGGCCAGACACCCACCAAGGAGGAGCTGGACGCCATCATCGAGGAGGTGGATGAGGACGGCAGCGGCACC
ATCGACTTCGAGGAGTTCTTGGTCATGATGGTGCGCCAGATGAAAGAGGACGCGAAAGGGAAGAGCGAGG
AGGAGCTGGCCGAGTGCTTCCGCATCTTCGACAGGAATGCAGACGGCTACATCGACCCGGAGGAGCTGGC
TGAGATTTTCAGGGCCTCCGGGGAGCACGTGACGGACGAGGAGATCGAATCTCTGATGAAAGACGGCGAC
AAGAACAACGACGGCCGCATTGACTTCGACGAGTTCCTGAAGATGATGGAGGGCGTGCAGTAA

Translation (160 aa):
MTDQQAEARSYLSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGT
IDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDPEELAEIFRASGEHVTDEEIESLMKDGD
KNNDGRIDFDEFLKMMEGVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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