NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13348.1 Public Homo sapiens 20 MATN4 24 110 108 CCDS HistoryNCBI Gene:8785Re-query CCDS DB by CCDS ID:13348.1Re-query CCDS DB by GeneID:8785See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13348.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372756.6 ENSP00000361842.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372756.6Link to Ensembl Protein Viewer:ENSP00000361842.1Re-query CCDS DB by Nucleotide ID:ENST00000372756Re-query CCDS DB by Protein ID:ENSP00000361842
Original member Current member EBI ENST00000537548.3 ENSP00000440328.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537548.3Link to Ensembl Protein Viewer:ENSP00000440328.1Re-query CCDS DB by Nucleotide ID:ENST00000537548Re-query CCDS DB by Protein ID:ENSP00000440328
Original member Current member NCBI NM_001393530.1 NP_001380459.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001393530.1Link to Protein Sequence:NP_001380459.1Re-query CCDS DB by Nucleotide ID:NM_001393530Re-query CCDS DB by Protein ID:NP_001380459Link to BLAST:NP_001380459.1
Original member Current member NCBI NM_003833.5 NP_003824.2 Accepted alive Link to Nucleotide Sequence:NM_003833.5Link to Protein Sequence:NP_003824.2Re-query CCDS DB by Nucleotide ID:NM_003833Re-query CCDS DB by Protein ID:NP_003824Link to BLAST:NP_003824.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001380459.1 581 O95460-2 581 100% 0 0
NP_003824.2 581 O95460-2 581 100% 0 0

Chromosomal Locations for CCDS 13348.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 45293767 45293825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45293908 45294015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45297918 45298070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45298170 45298583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45300887 45301009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45301102 45301224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45301321 45301443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45304228 45304797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45305510 45305582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGAGAGGCCTTCTTTGCTGGCCCGTGTTGCTGCTCCTTCTTCAGCCCTGGGAAACCCAGCTCCAGTTGA
CAGGTCCCAGGTGTCACACTGGGCCCCTGGATCTGGTGTTCGTGATTGACAGCTCCCGCAGCGTGCGCCC
TTTCGAGTTCGAGACCATGCGGCAGTTCCTCATGGGCCTCCTCCGAGGCCTGAACGTGGGTCCCAACGCC
ACGCGCGTTGGCGTGATCCAGTATTCGAGTCAAGTGCAGAGCGTCTTCCCTCTCCGCGCGTTCTCTCGCC
GCGAGGACATGGAGCGCGCCATCCGCGACCTGGTGCCTCTGGCGCAAGGCACCATGACGGGACTGGCAAT
CCAGTACGCCATGAACGTGGCCTTCAGTGTGGCCGAGGGCGCGCGACCGCCAGAGGAGCGCGTGCCGCGT
GTCGCTGTCATCGTGACAGACGGGCGGCCCCAGGACCGCGTGGCCGAGGTGGCGGCACAGGCGCGCGCCC
GCGGCATTGAAATTTACGCGGTGGGGGTGCAGCGCGCGGACGTGGGCTCCCTGCGCGCCATGGCATCGCC
CCCGCTAGACGAGCACGTCTTCCTCGTAGAGTCCTTCGACCTCATCCAGGAGTTCGGCCTGCAGTTCCAG
AGCCGGCTGTGTGCCATTGATCTGTGTGCTGAAGGGACCCATGGATGTGAGCACCACTGCGTCAATTCCC
CAGGCTCCTATTTCTGTCACTGCCAAGTTGGCTTTGTACTCCAGCAGGACCAGAGGAGCTGCAGGGCCAT
TGACTACTGCAGCTTTGGGAACCATAGCTGTCAGCATGAGTGTGTTAGCACCCCTGGTGGGCCACGGTGC
CACTGCAGAGAGGGCCATGACTTGCAGCCTGATGGGAGGAGCTGTCAGGTCCGGGACCTTTGCAATGGCG
TGGACCATGGCTGTGAGTTCCAGTGTGTGAGCGAGGGCCTCTCCTACCGCTGCCTGTGCCCCGAGGGGCG
GCAACTTCAGGCAGATGGCAAGAGCTGCAACCGGTGCCGGGAAGGCCACGTGGACCTTGTTCTGCTGGTT
GATGGCTCCAAGAGCGTGCGTCCACAAAACTTCGAGCTAGTGAAGCGCTTCGTGAACCAGATTGTGGACT
TCCTAGATGTGTCCCCCGAGGGCACGCGGGTGGGGCTGGTGCAGTTCTCGAGCCGCGTGCGCACCGAGTT
CCCTCTGGGTCGCTACGGCACCGCAGCCGAGGTGAAGCAGGCGGTCCTGGCCGTGGAGTACATGGAACGC
GGCACCATGACAGGGCTGGCGTTGCGGCACATGGTGGAGCACAGCTTCTCCGAGGCGCAGGGTGCACGGC
CCCGTGCCCTTAACGTGCCTCGTGTTGGCCTGGTCTTCACGGATGGCCGCTCCCAGGATGACATCTCGGT
GTGGGCAGCGCGCGCCAAGGAGGAAGGCATCGTCATGTACGCCGTGGGCGTGGGCAAGGCGGTGGAGGCG
GAGCTGCGCGAGATCGCCTCGGAGCCAGCGGAACTGCACGTGTCCTATGCCCCGGACTTCGGCACCATGA
CGCACCTGCTGGAGAACCTCAGAGGCAGCATCTGTCCAGAGGAGGGCATCAGCGCAGGGACAGAGCTTCG
GAGCCCATGCGAATGCGAAAGCCTCGTGGAGTTCCAGGGCCGCACGCTGGGGGCGCTCGAGAGCCTGACG
CTGAACCTGGCCCAGCTGACGGCGCGCCTGGAGGATCTGGAGAACCAGCTGGCCAACCAGAAGTGA

Translation (581 aa):
MRGLLCWPVLLLLLQPWETQLQLTGPRCHTGPLDLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNA
TRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPLAQGTMTGLAIQYAMNVAFSVAEGARPPEERVPR
VAVIVTDGRPQDRVAEVAAQARARGIEIYAVGVQRADVGSLRAMASPPLDEHVFLVESFDLIQEFGLQFQ
SRLCAIDLCAEGTHGCEHHCVNSPGSYFCHCQVGFVLQQDQRSCRAIDYCSFGNHSCQHECVSTPGGPRC
HCREGHDLQPDGRSCQVRDLCNGVDHGCEFQCVSEGLSYRCLCPEGRQLQADGKSCNRCREGHVDLVLLV
DGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMER
GTMTGLALRHMVEHSFSEAQGARPRALNVPRVGLVFTDGRSQDDISVWAARAKEEGIVMYAVGVGKAVEA
ELREIASEPAELHVSYAPDFGTMTHLLENLRGSICPEEGISAGTELRSPCECESLVEFQGRTLGALESLT
LNLAQLTARLEDLENQLANQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH