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Report for CCDS13298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13298.1 Public Homo sapiens 20 CTNNBL1 24 110 108 CCDS HistoryNCBI Gene:56259Re-query CCDS DB by CCDS ID:13298.1Re-query CCDS DB by GeneID:56259See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13298.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361383.11 ENSP00000355050.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361383.11Link to Ensembl Protein Viewer:ENSP00000355050.6Re-query CCDS DB by Nucleotide ID:ENST00000361383Re-query CCDS DB by Protein ID:ENSP00000355050
Original member Current member NCBI NM_030877.5 NP_110517.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030877.5Link to Protein Sequence:NP_110517.2Re-query CCDS DB by Nucleotide ID:NM_030877Re-query CCDS DB by Protein ID:NP_110517Link to BLAST:NP_110517.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110517.2 563 Q8WYA6-1 563 100% 0 0

Chromosomal Locations for CCDS 13298.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 37694123 37694152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37732879 37733067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37737378 37737484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37746468 37746607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37757559 37757656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37765197 37765290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37767953 37768044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37777345 37777417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37777654 37777712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37779187 37779335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37802867 37803048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37840102 37840199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37842339 37842419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37859899 37860036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37860272 37860344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37871925 37872013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGGACGTGGGCGAACTTCTGAGCTACCAGCCCAATAGGGGCACAAAACGTCCCCGGGATGATGAAGAGG
AGGAGCAGAAGATGCGTCGGAAACAAACTGGTACTCGAGAACGCGGCCGCTATCGGGAAGAAGAAATGAC
TGTGGTGGAGGAAGCGGATGATGACAAAAAAAGGCTGCTGCAGATTATTGACAGAGATGGGGAAGAGGAA
GAGGAAGAGGAGGAGCCATTGGATGAAAGCTCAGTGAAGAAAATGATCCTCACATTTGAAAAGAGATCAT
ATAAAAACCAAGAATTGCGGATTAAGTTTCCAGACAATCCAGAGAAGTTCATGGAATCCGAGCTGGACCT
AAATGACATCATTCAGGAGATGCACGTGGTGGCCACCATGCCAGACCTGTACCACCTTCTGGTGGAGCTG
AATGCTGTACAGTCGCTTCTCGGCTTGCTCGGACACGATAATACAGATGTGTCCATAGCTGTGGTCGATT
TGCTTCAGGAATTAACAGATATAGACACCCTCCATGAGAGTGAAGAGGGAGCAGAAGTGCTCATCGATGC
TCTGGTGGATGGGCAGGTGGTAGCACTGCTGGTACAGAATCTGGAGCGCCTGGATGAGTCTGTGAAAGAG
GAGGCAGATGGCGTCCACAACACTCTGGCTATTGTGGAAAACATGGCTGAGTTCCGGCCTGAGATGTGTA
CAGAGGGTGCCCAGCAGGGTCTTCTACAGTGGCTGTTGAAGAGGCTGAAGGCAAAGATGCCTTTTGATGC
CAACAAACTGTATTGCAGTGAAGTGCTGGCCATATTGCTCCAGGACAATGATGAAAACAGGGAATTGCTT
GGGGAGCTGGATGGAATCGATGTGCTTCTTCAGCAGTTATCCGTGTTTAAAAGACACAATCCCAGCACGG
CTGAGGAGCAGGAGATGATGGAGAATCTGTTTGATTCCCTCTGCTCCTGTCTAATGCTTAGTTCCAATCG
TGAGCGCTTCCTGAAGGGCGAGGGTCTTCAGCTGATGAATCTCATGCTCAGGGAAAAGAAGATCTCCCGG
AGCAGTGCCCTGAAAGTGCTGGACCATGCCATGATTGGCCCCGAAGGCACAGACAACTGCCATAAGTTTG
TTGACATTCTTGGCTTACGAACCATCTTTCCCCTCTTTATGAAATCTCCCAGGAAGATCAAGAAAGTGGG
AACCACTGAGAAGGAACATGAAGAGCATGTCTGTTCGATCCTGGCTTCCCTCCTGCGGAACCTGAGAGGG
CAGCAGCGGACCCGGCTTCTGAATAAATTCACTGAAAATGACAGTGAGAAGGTTGACAGACTAATGGAGT
TGCATTTTAAATATCTGGGTGCAATGCAGGTGGCGGACAAGAAGATTGAAGGGGAAAAACACGACATGGT
CCGGCGAGGAGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCTCCGGCGCCTGGATGCGGGGCTC
TTTGTTCTCCAGCACATCTGCTACATCATGGCCGAGATCTGCAATGCCAATGTCCCCCAGATTCGCCAGA
GGGTTCACCAGATCCTAAACATGCGAGGAAGCTCCATCAAAATTGTCAGGCATATCATCAAGGAGTATGC
AGAGAACATCGGGGACGGCCGGAGCCCGGAGTTCCGGGAGAACGAGCAAAAGCGCATCCTGGGCTTGCTG
GAGAACTTCTAG

Translation (563 aa):
MDVGELLSYQPNRGTKRPRDDEEEEQKMRRKQTGTRERGRYREEEMTVVEEADDDKKRLLQIIDRDGEEE
EEEEEPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDIIQEMHVVATMPDLYHLLVEL
NAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEGAEVLIDALVDGQVVALLVQNLERLDESVKE
EADGVHNTLAIVENMAEFRPEMCTEGAQQGLLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELL
GELDGIDVLLQQLSVFKRHNPSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISR
SSALKVLDHAMIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG
QQRTRLLNKFTENDSEKVDRLMELHFKYLGAMQVADKKIEGEKHDMVRRGEIIDNDTEEEFYLRRLDAGL
FVLQHICYIMAEICNANVPQIRQRVHQILNMRGSSIKIVRHIIKEYAENIGDGRSPEFRENEQKRILGLL
ENF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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