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Report for CCDS13282.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13282.1 Public Homo sapiens 20 SLA2 24 110 108 CCDS HistoryNCBI Gene:84174Re-query CCDS DB by CCDS ID:13282.1Re-query CCDS DB by GeneID:84174See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13282.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262866.9 ENSP00000262866.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262866.9Link to Ensembl Protein Viewer:ENSP00000262866.4Re-query CCDS DB by Nucleotide ID:ENST00000262866Re-query CCDS DB by Protein ID:ENSP00000262866
Original member Current member NCBI NM_032214.4 NP_115590.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032214.4Link to Protein Sequence:NP_115590.1Re-query CCDS DB by Nucleotide ID:NM_032214Re-query CCDS DB by Protein ID:NP_115590Link to BLAST:NP_115590.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115590.1 261 Q9H6Q3-1 261 100% 0 0

Chromosomal Locations for CCDS 13282.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 36613866 36613986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36614305 36614437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36615225 36615374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36632595 36632698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36633543 36633629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36634490 36634589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36641245 36641335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGGAAGTCTGCCCAGCAGAAGAAAATCTCTGCCAAGCCCAAGCTTGAGTTCCTCTGTCCAAGGCCAGG
GACCTGTGACCATGGAAGCAGAGAGAAGCAAGGCCACAGCCGTGGCCCTGGGCAGTTTCCCGGCAGGTGG
CCCGGCCGAGCTGTCGCTGAGACTCGGGGAGCCATTGACCATCGTCTCTGAGGATGGAGACTGGTGGACG
GTGCTGTCTGAAGTCTCAGGCAGAGAGTATAACATCCCCAGCGTCCACGTGGCCAAAGTCTCCCATGGGT
GGCTGTATGAGGGCCTGAGCAGGGAGAAAGCAGAGGAACTGCTGTTGTTACCTGGGAACCCTGGAGGGGC
CTTCCTCATCCGGGAGAGCCAGACCAGGAGAGGCTCTTACTCTCTGTCAGTCCGCCTCAGCCGCCCTGCA
TCCTGGGACCGGATCAGACACTACAGGATCCACTGCCTTGACAATGGCTGGCTGTACATCTCACCGCGCC
TCACCTTCCCCTCACTCCAGGCCCTGGTGGACCATTACTCTGAGCTGGCGGATGACATCTGCTGCCTACT
CAAGGAGCCCTGTGTCCTGCAGAGGGCTGGCCCGCTCCCTGGCAAGGATATACCCCTACCTGTGACTGTG
CAGAGGACACCACTCAACTGGAAAGAGCTGGACAGCTCCCTCCTGTTTTCTGAAGCTGCCACAGGGGAGG
AGTCTCTTCTCAGTGAGGGTCTCCGGGAGTCCCTCAGCTTCTACATCAGCCTGAATGACGAGGCTGTCTC
TTTGGATGATGCCTAG

Translation (261 aa):
MGSLPSRRKSLPSPSLSSSVQGQGPVTMEAERSKATAVALGSFPAGGPAELSLRLGEPLTIVSEDGDWWT
VLSEVSGREYNIPSVHVAKVSHGWLYEGLSREKAEELLLLPGNPGGAFLIRESQTRRGSYSLSVRLSRPA
SWDRIRHYRIHCLDNGWLYISPRLTFPSLQALVDHYSELADDICCLLKEPCVLQRAGPLPGKDIPLPVTV
QRTPLNWKELDSSLLFSEAATGEESLLSEGLRESLSFYISLNDEAVSLDDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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