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Report for CCDS13245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13245.1 Public Homo sapiens 20 GSS 24 110 108 CCDS HistoryNCBI Gene:2937Re-query CCDS DB by CCDS ID:13245.1Re-query CCDS DB by GeneID:2937See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13245.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000643188.1 ENSP00000493903.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000643188.1Link to Ensembl Protein Viewer:ENSP00000493903.1Re-query CCDS DB by Nucleotide ID:ENST00000643188Re-query CCDS DB by Protein ID:ENSP00000493903
Original member Current member EBI ENST00000644793.1 ENSP00000495750.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644793.1Link to Ensembl Protein Viewer:ENSP00000495750.1Re-query CCDS DB by Nucleotide ID:ENST00000644793Re-query CCDS DB by Protein ID:ENSP00000495750
Original member Current member EBI ENST00000651619.1 ENSP00000498303.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651619.1Link to Ensembl Protein Viewer:ENSP00000498303.1Re-query CCDS DB by Nucleotide ID:ENST00000651619Re-query CCDS DB by Protein ID:ENSP00000498303
Original member Current member NCBI NM_000178.4 NP_000169.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000178.4Link to Protein Sequence:NP_000169.1Re-query CCDS DB by Nucleotide ID:NM_000178Re-query CCDS DB by Protein ID:NP_000169Link to BLAST:NP_000169.1
Original member Current member NCBI NM_001322494.1 NP_001309423.1 Accepted alive Link to Nucleotide Sequence:NM_001322494.1Link to Protein Sequence:NP_001309423.1Re-query CCDS DB by Nucleotide ID:NM_001322494Re-query CCDS DB by Protein ID:NP_001309423Link to BLAST:NP_001309423.1
Original member Current member NCBI NM_001322495.1 NP_001309424.1 Accepted alive Link to Nucleotide Sequence:NM_001322495.1Link to Protein Sequence:NP_001309424.1Re-query CCDS DB by Nucleotide ID:NM_001322495Re-query CCDS DB by Protein ID:NP_001309424Link to BLAST:NP_001309424.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000169.1 474 P48637-1 474 100% 0 0
NP_001309423.1 474 P48637-1 474 100% 0 0
NP_001309424.1 474 P48637-1 474 100% 0 0

Chromosomal Locations for CCDS 13245.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 34928828 34928951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34929401 34929590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34931336 34931417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34931939 34932133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34935576 34935642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34936763 34936840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34936943 34937023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34941713 34941829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34942488 34942627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34942931 34943006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34945953 34946098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34951724 34951852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGGCCACCAACTGGGGGAGCCTCTTGCAGGATAAACAGCAGCTAGAGGAGCTGGCACGGCAGGCCGTGG
ACCGGGCCCTGGCTGAGGGAGTATTGCTGAGGACCTCACAGGAGCCCACTTCCTCGGAGGTGGTGAGCTA
TGCCCCATTCACGCTCTTCCCCTCACTGGTCCCCAGTGCCCTGCTGGAGCAAGCCTATGCTGTGCAGATG
GACTTCAACCTGCTAGTGGATGCTGTCAGCCAGAACGCTGCCTTCCTGGAGCAAACTCTTTCCAGCACCA
TCAAACAGGATGACTTTACCGCTCGTCTCTTTGACATCCACAAGCAAGTCCTAAAAGAGGGCATTGCCCA
GACTGTGTTCCTGGGCCTGAATCGCTCAGACTACATGTTCCAGCGCAGCGCAGATGGCTCCCCAGCCCTG
AAACAGATCGAAATCAACACCATCTCTGCCAGCTTTGGGGGCCTGGCCTCCCGGACCCCAGCTGTGCACC
GACATGTTCTCAGTGTCCTGAGTAAGACCAAAGAAGCTGGCAAGATCCTCTCTAATAATCCCAGCAAGGG
ACTGGCCCTGGGAATTGCCAAAGCCTGGGAGCTCTACGGCTCACCCAATGCTCTGGTGCTACTGATTGCT
CAAGAGAAGGAAAGAAACATATTTGACCAGCGTGCCATAGAGAATGAGCTACTGGCCAGGAACATCCATG
TGATCCGACGAACATTTGAAGATATCTCTGAAAAGGGGTCTCTGGACCAAGACCGAAGGCTGTTTGTGGA
TGGCCAGGAAATTGCTGTGGTTTACTTCCGGGATGGCTACATGCCTCGTCAGTACAGTCTACAGAATTGG
GAAGCACGTCTACTGCTGGAGAGGTCACATGCTGCCAAGTGCCCAGACATTGCCACCCAGCTGGCTGGGA
CTAAGAAGGTGCAGCAGGAGCTAAGCAGGCCGGGCATGCTGGAGATGTTGCTCCCTGGCCAGCCTGAGGC
TGTGGCCCGCCTCCGCGCCACCTTTGCTGGCCTCTACTCACTGGATGTGGGTGAAGAAGGGGACCAGGCC
ATCGCCGAGGCCCTTGCTGCCCCTAGCCGGTTTGTGCTAAAGCCCCAGAGAGAGGGTGGAGGTAACAACC
TATATGGGGAGGAAATGGTACAGGCCCTGAAACAGCTGAAGGACAGTGAGGAGAGGGCCTCCTACATCCT
CATGGAGAAGATCGAACCTGAGCCTTTTGAGAATTGCCTGCTACGGCCTGGCAGCCCTGCCCGAGTGGTC
CAGTGCATTTCAGAGCTGGGCATCTTTGGGGTCTATGTCAGGCAGGAAAAGACACTCGTGATGAACAAGC
ACGTGGGGCATCTACTTCGAACCAAAGCCATCGAGCATGCAGATGGTGGTGTGGCAGCGGGAGTGGCAGT
CCTGGACAACCCATACCCTGTGTGA

Translation (474 aa):
MATNWGSLLQDKQQLEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALLEQAYAVQM
DFNLLVDAVSQNAAFLEQTLSSTIKQDDFTARLFDIHKQVLKEGIAQTVFLGLNRSDYMFQRSADGSPAL
KQIEINTISASFGGLASRTPAVHRHVLSVLSKTKEAGKILSNNPSKGLALGIAKAWELYGSPNALVLLIA
QEKERNIFDQRAIENELLARNIHVIRRTFEDISEKGSLDQDRRLFVDGQEIAVVYFRDGYMPRQYSLQNW
EARLLLERSHAAKCPDIATQLAGTKKVQQELSRPGMLEMLLPGQPEAVARLRATFAGLYSLDVGEEGDQA
IAEALAAPSRFVLKPQREGGGNNLYGEEMVQALKQLKDSEERASYILMEKIEPEPFENCLLRPGSPARVV
QCISELGIFGVYVRQEKTLVMNKHVGHLLRTKAIEHADGGVAAGVAVLDNPYPV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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