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Report for CCDS13241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13241.1 Public Homo sapiens 20 NCOA6 24 110 108 CCDS HistoryNCBI Gene:23054Re-query CCDS DB by CCDS ID:13241.1Re-query CCDS DB by GeneID:23054See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13241.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359003.7 ENSP00000351894.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359003.7Link to Ensembl Protein Viewer:ENSP00000351894.2Re-query CCDS DB by Nucleotide ID:ENST00000359003Re-query CCDS DB by Protein ID:ENSP00000351894
Original member Current member EBI ENST00000374796.6 ENSP00000363929.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374796.6Link to Ensembl Protein Viewer:ENSP00000363929.2Re-query CCDS DB by Nucleotide ID:ENST00000374796Re-query CCDS DB by Protein ID:ENSP00000363929
Original member Current member NCBI NM_001318240.1 NP_001305169.1 Accepted alive Link to Nucleotide Sequence:NM_001318240.1Link to Protein Sequence:NP_001305169.1Re-query CCDS DB by Nucleotide ID:NM_001318240Re-query CCDS DB by Protein ID:NP_001305169Link to BLAST:NP_001305169.1
Original member Current member NCBI NM_014071.5 NP_054790.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014071.5Link to Protein Sequence:NP_054790.2Re-query CCDS DB by Nucleotide ID:NM_014071Re-query CCDS DB by Protein ID:NP_054790Link to BLAST:NP_054790.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305169.1 2063 Q14686 2063 100% 0 0
NP_054790.2 2063 Q14686 2063 100% 0 0

Chromosomal Locations for CCDS 13241.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 34715322 34715365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34727259 34727407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34732559 34732595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34736690 34736758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34740363 34743341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34746807 34746928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34749403 34750519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34754722 34754868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34757220 34758104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34758805 34758933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34768464 34768586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34776293 34776448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34782121 34782355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6192 nt):
ATGGTTTTGGATGACCTTCCAAACTTAGAAGACATCTATACTTCCTTGTGTTCATCAACAATGGAAGACT
CAGAGATGGATTTTGACTCTGGACTAGAAGATGATGACACAAAAAGTGATAGTATTTTGGAGGATTCCAC
AATTTTTGTGGCCTTCAAAGGAAATATAGATGATAAAGACTTCAAATGGAAATTAGATGCAATATTGAAA
AACGTGCCCAATTTGTTACACATGGAGTCCAGCAAGCTAAAAGTACAGAAGGTGGAGCCCTGGAACAGCG
TGCGTGTGACATTCAACATCCCCCGGGAAGCAGCGGAGCGGCTACGGATCCTTGCTCAGAGCAACAACCA
GCAGCTTCGGGATTTAGGGATTCTCTCCGTTCAGATTGAAGGGGAAGGTGCTATTAACCTGGCTTTGGCT
CAGAACCGAAGCCAAGATGTGAGAATGAATGGACCCATGGGAGCTGGAAATTCAGTTAGGATGGAGGCGG
GATTTCCTATGGCAAGTGGTCCAGGAATAATAAGGATGAACAACCCTGCCACTGTTATGATACCCCCGGG
TGGAAATGTGTCATCTTCCATGATGGCACCAGGCCCCAATCCAGAGCTGCAGCCCAGGACTCCTCGCCCT
GCTTCTCAGTCAGATGCAATGGATCCACTCCTCTCTGGGCTCCATATACAGCAGCAAAGTCATCCCTCAG
GATCTTTAGCTCCCCCACATCACCCAATGCAGCCTGTCTCTGTGAACAGACAAATGAACCCAGCTAATTT
TCCCCAGCTGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAA
CAGCAGCAACAACAGTTGCAGGCAAGACCCCCACAGCAACATCAGCAGCAACAGCCACAGGGAATTCGAC
CCCAGTTTACTGCCCCAACTCAGGTGCCTGTTCCTCCAGGCTGGAACCAGCTGCCTTCTGGAGCCCTTCA
ACCTCCTCCAGCCCAGGGTTCTCTGGGCACAATGACTGCAAACCAAGGGTGGAAGAAGGCTCCCTTGCCC
GGCCCAATGCAACAGCAACTCCAGGCAAGACCATCCTTAGCCACGGTACAGACGCCTTCCCACCCTCCCC
CTCCATATCCCTTTGGCAGCCAGCAAGCCTCACAAGCCCACACAAACTTTCCTCAGATGAGCAACCCAGG
CCAGTTCACAGCTCCTCAGATGAAGAGTTTGCAGGGAGGGCCCTCTAGGGTCCCAACTCCCTTGCAGCAG
CCCCACCTCACCAACAAGTCTCCTGCCTCCTCACCCTCCTCCTTCCAGCAGGGATCCCCTGCATCCTCCC
CAACGGTTAACCAAACTCAGCAGCAGATGGGACCAAGGCCACCTCAAAATAACCCACTTCCCCAGGGATT
TCAGCAGCCTGTCAGCTCTCCGGGTCGGAATCCTATGGTTCAACAGGGAAATGTGCCACCTAACTTCATG
GTGATGCAGCAGCAACCACCAAACCAGGGGCCACAGAGTTTACATCCAGGCCTAGGAGGAATGCCTAAAC
GCCTCCCACCTGGCTTCTCAGCAGGACAGGCCAATCCGAACTTTATGCAAGGTCAGGTGCCTTCGACCAC
AGCAACCACCCCTGGGAATTCAGGAGCCCCTCAGCTGCAAGCAAATCAAAATGTCCAGCATGCAGGTGGT
CAAGGAGCTGGTCCTCCTCAAAACCAGATGCAGGTGTCCCACGGGCCGCCAAATATGATGCAGCCCAGCC
TCATGGGAATTCATGGCAACATGAACAATCAGCAGGCTGGTACTTCTGGGGTTCCTCAAGTGAACCTCAG
CAACATGCAAGGCCAGCCCCAGCAGGGCCCACCATCTCAGCTGATGGGCATGCACCAGCAAATCGTGCCC
TCCCAGGGCCAGATGGTCCAGCAACAAGGAACCTTGAACCCTCAGAACCCTATGATCCTTTCAAGGGCCC
AGCTTATGCCACAGGGCCAGATGATGGTGAACCCCCCGAGCCAAAATCTTGGGCCCTCGCCCCAAAGGAT
GACCCCACCCAAGCAGATGCTTTCCCAGCAGGGCCCACAAATGATGGCGCCACATAACCAGATGATGGGG
CCTCAGGGGCAGGTTTTGCTCCAACAGAACCCAATGATAGAGCAGATTATGACCAATCAAATGCAGGGGA
ATAAGCAGCAGTTTAACACTCAGAACCAGTCCAATGTCATGCCGGGACCAGCCCAGATAATGAGGGGACC
AACTCCAAACATGCAAGGAAATATGGTGCAGTTTACGGGACAGATGTCAGGACAGATGCTGCCCCAGCAA
GGGCCTGTGAACAACAGTCCATCTCAGGTTATGGGCATTCAGGGACAGGTCCTGCGGCCACCAGGGCCCA
GCCCACACATGGCCCAGCAGCATGGTGATCCTGCTACTACAGCAAATAACGATGTCAGTTTATCTCAGAT
GATGCCTGATGTTAGCATTCAACAAACCAACATGGTCCCCCCTCATGTGCAGGCCATGCAGGGAAACAGT
GCCTCGGGAAACCACTTCTCAGGCCATGGGATGTCTTTCAATGCACCTTTCAGTGGAGCTCCCAATGGAA
ATCAGATGTCCTGTGGTCAAAATCCAGGCTTCCCAGTCAATAAGGATGTCACGCTAACGAGCCCATTGTT
GGTCAACTTATTGCAGAGTGACATATCTGCAGGCCATTTTGGGGTAAACAATAAGCAAAATAATACCAAC
GCAAATAAACCGAAGAAGAAGAAACCCCCTCGGAAGAAGAAAAATAGTCAGCAAGATCTAAACACCCCAG
ATACTCGCCCAGCTGGTCTGGAAGAGGCTGATCAGCCACCGTTGCCTGGAGAACAAGGAATTAACTTGGA
TAACTCAGGCCCTAAACTGCCAGAATTTTCAAACCGGCCACCAGGTTATCCTTCTCAACCAGTTGAACAG
AGGCCACTTCAGCAGATGCCTCCTCAACTCATGCAGCATGTGGCACCCCCACCACAGCCACCACAGCAGC
AGCCACAGCCACAACTGCCTCAGCAGCAGCAGCCACCACCTCCCAGTCAGCCACAGTCTCAGCAGCAGCA
GCAGCAGCAGCAACAAATGATGATGATGCTCATGATGCAGCAGGATCCCAAATCAGTTAGGCTTCCAGTC
TCTCAAAATGTCCATCCTCCAAGGGGCCCCCTGAACCCCGACTCCCAGAGAATGCCCATGCAACAGAGTG
GCAGTGTGCCTGTCATGGTCAGTCTGCAAGGACCTGCCTCCGTGCCACCATCACCTGATAAACAAAGAAT
GCCAATGCCTGTGAATACTCCCTTGGGAAGCAATTCAAGGAAAATGGTCTATCAGGAGAGCCCGCAGAAT
CCTTCCAGCTCGCCACTGGCGGAGATGGCCTCACTCCCTGAAGCAAGTGGCAGTGAAGCACCATCTGTCC
CAGGAGGCCCAAACAACATGCCTTCACATGTAGTACTTCCCCAGAATCAGTTAATGATGACAGGGCCAAA
ACCTGGACCATCGCCCCTTTCAGCAACTCAAGGTGCAACTCCCCAGCAACCCCCTGTAAATTCCCTGCCC
AGCTCTCACGGCCACCACTTCCCAAATGTGGCTGCGCCAACCCAGACATCTAGGCCCAAAACACCAAACA
GAGCCAGCCCCAGACCCTATTATCCTCAGACACCCAACAACCGCCCTCCCAGCACAGAACCTTCAGAAAT
CAGTCTGTCACCAGAAAGACTCAATGCCTCCATAGCAGGACTCTTCCCTCCACAGATTAATATTCCTTTA
CCTCCTAGGCCAAATTTAAACAGGGGCTTTGATCAACAAGGCCTAAATCCAACAACTTTGAAGGCCATCG
GGCAAGCACCTTCAAATCTTACCATGAATCCTTCCAATTTTGCTACCCCACAAACTCACAAATTAGATTC
TGTGGTAGTGAATTCTGGAAAGCAGTCTAATTCTGGAGCAACAAAACGGGCAAGTCCAAGCAACAGTCGC
AGGTCTAGTCCTGGGTCCAGTAGGAAAACCACTCCAAGCCCTGGGAGGCAAAATTCAAAAGCCCCTAAAC
TTACTCTGGCCTCTCAGACAAATGCAGCCCTATTGCAGAATGTGGAGTTGCCGAGAAATGTATTGGTCAG
TCCCACTCCTCTGGCCAATCCCCCTGTACCTGGGAGCTTTCCTAACAACAGTGGGCTGAATCCTCAGAAT
TCTACTGTGTCTGTGGCTGCAGTTGGGGGTGTTGTTGAGGATAACAAGGAGAGCTTGAATGTGCCTCAGG
ACAGTGATTGCCAGAATTCCCAGAGTAGGAAGGAACAGGTAAACATTGAACTAAAAGCAGTCCCTGCCCA
AGAAGTTAAAATGGTTGTCCCTGAAGATCAGTCCAAAAAGGATGGGCAGCCTTCGGATCCTAACAAACTT
CCCAGTGTCGAAGAGAACAAAAATTTGGTGTCTCCTGCTATGAGGGAAGCACCAACATCGTTAAGTCAAC
TTCTTGACAACTCTGGAGCTCCCAATGTGACAATTAAACCCCCTGGGCTTACAGATCTGGAAGTAACACC
TCCAGTAGTTTCTGGGGAGGACCTCAAAAAAGCATCTGTCATTCCCACACTGCAGGATCTGTCTTCTTCT
AAAGAACCTTCTAATTCCCTAAACTTACCTCACAGTAATGAGCTGTGTTCATCCCTTGTGCATCCCGAAT
TGAGTGAGGTCAGTTCTAACGTTGCACCAAGCATCCCTCCAGTAATGTCAAGACCTGTTAGCTCTTCCTC
CATTTCCACTCCCTTGCCCCCAAATCAAATAACTGTATTTGTCACTTCCAATCCCATCACAACTTCAGCT
AACACATCAGCAGCTTTGCCAACTCACTTGCAGTCTGCATTGATGTCAACAGTTGTCACAATGCCCAATG
CGGGTAGCAAGGTTATGGTTTCTGAGGGACAGTCAGCTGCTCAGTCTAATGCCCGGCCTCAGTTCATTAC
ACCTGTCTTTATCAATTCATCCTCAATAATTCAGGTTATGAAAGGATCACAGCCAAGCACAATTCCTGCA
GCCCCACTGACAACCAACTCTGGCCTGATGCCTCCCTCTGTTGCAGTTGTTGGCCCTTTACACATACCTC
AGAACATAAAATTTTCTTCTGCTCCTGTACCGCCTAATGCCCTCTCCAGTAGTCCTGCTCCAAACATCCA
GACAGGTCGACCTTTGGTCCTTAGCTCACGAGCCACCCCTGTTCAGCTTCCTTCCCCTCCTTGTACGTCT
TCTCCAGTTGTCCCTTCTCATCCCCCTGTGCAGCAAGTGAAAGAATTGAATCCAGATGAGGCTAGCCCTC
AGGTGAACACCTCAGCAGATCAGAACACTCTTCCCTCTTCACAGTCAACCACAATGGTTTCTCCCCTTTT
GACCAATAGTCCAGGGTCCTCTGGCAACCGGCGAAGCCCAGTCTCGTCTAGTAAGGGCAAAGGAAAAGTG
GACAAAATTGGCCAAATTTTGTTGACCAAGGCATGTAAGAAAGTTACAGGCTCTCTTGAGAAAGGGGAAG
AACAATATGGTGCAGATGGAGAGACTGAAGGCCAAGGGCTAGACACCACAGCTCCGGGGCTCATGGGAAC
AGAGCAGTTATCCACAGAGCTGGACAGTAAAACCCCAACGCCCCCAGCACCCACTCTGCTAAAAATGACC
TCTAGCCCTGTGGGCCCGGGCACTGCCTCAGCAGGACCCAGCTTACCTGGCGGTGCTCTCCCCACCAGTG
TACGCTCGATAGTAACCACTCTGGTACCCTCCGAGCTCATCTCCGCCGTACCGACCACAAAAAGCAATCA
TGGTGGCATAGCATCTGAGTCACTTGCGGGTGGCCTAGTGGAGGAGAAGGTGGGATCCCATCCAGAACTT
CTACCCAGCATAGCCCCGTCGCAGAATTTAGTCTCAAAGGAAACTTCAACCACAGCACTGCAGGCCTCTG
TTGCCAGACCAGAGCTGGAGGTAAATGCTGCCATAGTCTCTGGACAAAGCAGTGAGCCCAAAGAGATAGT
TGAAAAGTCCAAAATCCCAGGCCGAAGAAACTCCCGAACTGAAGAGCCAACTGTGGCCTCTGAAAGTGTG
GAAAATGGACATCGTAAACGATCTTCTCGACCTGCTTCAGCCTCCAGCTCTACTAAAGACATAACCAGTG
CGGTGCAATCCAAGCGAAGAAAATCCAAGTAA

Translation (2063 aa):
MVLDDLPNLEDIYTSLCSSTMEDSEMDFDSGLEDDDTKSDSILEDSTIFVAFKGNIDDKDFKWKLDAILK
NVPNLLHMESSKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSVQIEGEGAINLALA
QNRSQDVRMNGPMGAGNSVRMEAGFPMASGPGIIRMNNPATVMIPPGGNVSSSMMAPGPNPELQPRTPRP
ASQSDAMDPLLSGLHIQQQSHPSGSLAPPHHPMQPVSVNRQMNPANFPQLQQQQQQQQQQQQQQQQQQQQ
QQQQQLQARPPQQHQQQQPQGIRPQFTAPTQVPVPPGWNQLPSGALQPPPAQGSLGTMTANQGWKKAPLP
GPMQQQLQARPSLATVQTPSHPPPPYPFGSQQASQAHTNFPQMSNPGQFTAPQMKSLQGGPSRVPTPLQQ
PHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGPRPPQNNPLPQGFQQPVSSPGRNPMVQQGNVPPNFM
VMQQQPPNQGPQSLHPGLGGMPKRLPPGFSAGQANPNFMQGQVPSTTATTPGNSGAPQLQANQNVQHAGG
QGAGPPQNQMQVSHGPPNMMQPSLMGIHGNMNNQQAGTSGVPQVNLSNMQGQPQQGPPSQLMGMHQQIVP
SQGQMVQQQGTLNPQNPMILSRAQLMPQGQMMVNPPSQNLGPSPQRMTPPKQMLSQQGPQMMAPHNQMMG
PQGQVLLQQNPMIEQIMTNQMQGNKQQFNTQNQSNVMPGPAQIMRGPTPNMQGNMVQFTGQMSGQMLPQQ
GPVNNSPSQVMGIQGQVLRPPGPSPHMAQQHGDPATTANNDVSLSQMMPDVSIQQTNMVPPHVQAMQGNS
ASGNHFSGHGMSFNAPFSGAPNGNQMSCGQNPGFPVNKDVTLTSPLLVNLLQSDISAGHFGVNNKQNNTN
ANKPKKKKPPRKKKNSQQDLNTPDTRPAGLEEADQPPLPGEQGINLDNSGPKLPEFSNRPPGYPSQPVEQ
RPLQQMPPQLMQHVAPPPQPPQQQPQPQLPQQQQPPPPSQPQSQQQQQQQQQMMMMLMMQQDPKSVRLPV
SQNVHPPRGPLNPDSQRMPMQQSGSVPVMVSLQGPASVPPSPDKQRMPMPVNTPLGSNSRKMVYQESPQN
PSSSPLAEMASLPEASGSEAPSVPGGPNNMPSHVVLPQNQLMMTGPKPGPSPLSATQGATPQQPPVNSLP
SSHGHHFPNVAAPTQTSRPKTPNRASPRPYYPQTPNNRPPSTEPSEISLSPERLNASIAGLFPPQINIPL
PPRPNLNRGFDQQGLNPTTLKAIGQAPSNLTMNPSNFATPQTHKLDSVVVNSGKQSNSGATKRASPSNSR
RSSPGSSRKTTPSPGRQNSKAPKLTLASQTNAALLQNVELPRNVLVSPTPLANPPVPGSFPNNSGLNPQN
STVSVAAVGGVVEDNKESLNVPQDSDCQNSQSRKEQVNIELKAVPAQEVKMVVPEDQSKKDGQPSDPNKL
PSVEENKNLVSPAMREAPTSLSQLLDNSGAPNVTIKPPGLTDLEVTPPVVSGEDLKKASVIPTLQDLSSS
KEPSNSLNLPHSNELCSSLVHPELSEVSSNVAPSIPPVMSRPVSSSSISTPLPPNQITVFVTSNPITTSA
NTSAALPTHLQSALMSTVVTMPNAGSKVMVSEGQSAAQSNARPQFITPVFINSSSIIQVMKGSQPSTIPA
APLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVPPNALSSSPAPNIQTGRPLVLSSRATPVQLPSPPCTS
SPVVPSHPPVQQVKELNPDEASPQVNTSADQNTLPSSQSTTMVSPLLTNSPGSSGNRRSPVSSSKGKGKV
DKIGQILLTKACKKVTGSLEKGEEQYGADGETEGQGLDTTAPGLMGTEQLSTELDSKTPTPPAPTLLKMT
SSPVGPGTASAGPSLPGGALPTSVRSIVTTLVPSELISAVPTTKSNHGGIASESLAGGLVEEKVGSHPEL
LPSIAPSQNLVSKETSTTALQASVARPELEVNAAIVSGQSSEPKEIVEKSKIPGRRNSRTEEPTVASESV
ENGHRKRSSRPASASSSTKDITSAVQSKRRKSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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