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Report for CCDS13165.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13165.2 Public Homo sapiens 20 CST7 24 110 108 CCDS HistoryNCBI Gene:8530Re-query CCDS DB by CCDS ID:13165.2Re-query CCDS DB by GeneID:8530See the combined annotation on chromosome 20 in Sequence Viewer

Public Note for CCDS 13165.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the available conservation and protein data, and by publications.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 13165.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000480798.2 ENSP00000420384.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000480798.2Link to Ensembl Protein Viewer:ENSP00000420384.1Re-query CCDS DB by Nucleotide ID:ENST00000480798Re-query CCDS DB by Protein ID:ENSP00000420384
Original member Current member NCBI NM_003650.4 NP_003641.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003650.4Link to Protein Sequence:NP_003641.3Re-query CCDS DB by Nucleotide ID:NM_003650Re-query CCDS DB by Protein ID:NP_003641Link to BLAST:NP_003641.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003641.3 145 O76096 145 100% 0 0

Chromosomal Locations for CCDS 13165.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 24949506 24949575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 24957287 24957459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 24958928 24959044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 24959635 24959712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGCGAGCGGCTGGAACTCTGCTGGCCTTCTGCTGCCTGGTCTTGAGCACCACTGGGGGCCCTTCCCCAG
ATACTTGTTCCCAGGACCTTAACTCACGTGTGAAGCCAGGATTTCCTAAAACAATAAAGACCAATGACCC
AGGAGTCCTCCAAGCAGCCAGATACAGTGTTGAAAAGTTCAACAACTGCACGAACGACATGTTCTTGTTC
AAGGAGTCCCGCATCACAAGGGCCCTAGTTCAGATAGTGAAAGGCCTGAAATATATGCTGGAGGTGGAAA
TTGGCAGAACTACCTGCAAGAAAAACCAGCACCTGCGTCTGGATGACTGTGACTTCCAAACCAACCACAC
CTTGAAGCAGACTCTGAGCTGCTACTCTGAAGTCTGGGTCGTGCCCTGGCTCCAGCACTTCGAGGTGCCT
GTTCTCCGTTGTCACTGA

Translation (145 aa):
MRAAGTLLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLF
KESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQTNHTLKQTLSCYSEVWVVPWLQHFEVP
VLRCH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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