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Report for CCDS13118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13118.1 Public Homo sapiens 20 NDUFAF5 24 110 108 CCDS HistoryNCBI Gene:79133Re-query CCDS DB by CCDS ID:13118.1Re-query CCDS DB by GeneID:79133See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13118.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378106.10 ENSP00000367346.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378106.10Link to Ensembl Protein Viewer:ENSP00000367346.5Re-query CCDS DB by Nucleotide ID:ENST00000378106Re-query CCDS DB by Protein ID:ENSP00000367346
Original member Current member NCBI NM_024120.5 NP_077025.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024120.5Link to Protein Sequence:NP_077025.2Re-query CCDS DB by Nucleotide ID:NM_024120Re-query CCDS DB by Protein ID:NP_077025Link to BLAST:NP_077025.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077025.2 345 Q5TEU4-1 345 100% 0 0

Chromosomal Locations for CCDS 13118.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 13785069 13785290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13787312 13787352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13788589 13788652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13793180 13793227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13794838 13794941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13798461 13798500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13801486 13801683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13808842 13808902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13816463 13816546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13816875 13816957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13817118 13817210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGCTGCGGCCGGCAGGGCTCTGGCGCTTATGTCGGCGACCTTGGGCGGCGAGGGTCCCAGCGGAGAATC
TTGGCCGTAGGGAAGTCACCTCTGGTGTCTCTCCCCGCGGTAGCACCTCGCCCAGAACCCTGAATATTTT
CGACCGGGATTTGAAAAGGAAACAGAAGAACTGGGCAGCCCGGCAGCCCGAGCCGACCAAATTTGACTAC
CTGAAGGAGGAGGTTGGAAGTCGGATCGCAGACCGTGTATATGACATACCCAGAAATTTCCCCCTTGCTT
TGGATCTTGGTTGTGGAAGAGGTTACATTGCACAATATTTGAATAAGGAAACTATTGGAAAGTTTTTCCA
AGCTGACATTGCAGAAAATGCTTTGAAAAATTCCTCAGAAACAGAAATACCTACTGTCAGCGTTTTAGCT
GATGAAGAATTCCTTCCCTTCAAAGAAAATACATTTGACCTGGTGGTTAGCAGTTTAAGTTTGCATTGGG
TGAATGACCTTCCTAGAGCACTTGAGCAGATTCATTATATTTTAAAACCAGATGGAGTGTTTATCGGTGC
AATGTTTGGAGGCGACACACTCTATGAACTTCGGTGTTCCTTACAGTTAGCGGAAACGGAAAGGGAAGGA
GGATTTTCTCCACACATTTCTCCTTTCACTGCTGTCAATGACCTGGGACATCTGCTTGGGAGAGCTGGCT
TTAATACTCTGACTGTGGACACTGATGAAATTCAAGTTAACTATCCTGGAATGTTTGAATTGATGGAAGA
TTTACAAGGTATGGGTGAGAGTAACTGTGCTTGGAATAGAAAAGCCCTGCTGCATCGAGACACAATGCTG
GCAGCTGCGGCAGTGTACAGAGAAATGTACAGAAATGAAGATGGTTCAGTACCTGCTACATACCAGATCT
ATTACATGATAGGATGGAAATATCATGAGTCACAGGCAAGACCAGCTGAAAGAGGTTCCGCAACTGTGTC
ATTTGGAGAGCTAGGAAAAATAAACAACCTTATGCCACCGGGGAAAAAATCACAATAA

Translation (345 aa):
MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAARQPEPTKFDY
LKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADIAENALKNSSETEIPTVSVLA
DEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETEREG
GFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTML
AAAAVYREMYRNEDGSVPATYQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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