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Report for CCDS13110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13110.1 Public Homo sapiens 20 SNAP25 24 110 108 CCDS HistoryNCBI Gene:6616Re-query CCDS DB by CCDS ID:13110.1Re-query CCDS DB by GeneID:6616See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13110.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254976.7 ENSP00000254976.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254976.7Link to Ensembl Protein Viewer:ENSP00000254976.3Re-query CCDS DB by Nucleotide ID:ENST00000254976Re-query CCDS DB by Protein ID:ENSP00000254976
Original member Current member EBI ENST00000691665.1 ENSP00000508541.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691665.1Link to Ensembl Protein Viewer:ENSP00000508541.1Re-query CCDS DB by Nucleotide ID:ENST00000691665Re-query CCDS DB by Protein ID:ENSP00000508541
Original member Current member EBI ENST00000685131.1 ENSP00000508837.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000685131.1Link to Ensembl Protein Viewer:ENSP00000508837.1Re-query CCDS DB by Nucleotide ID:ENST00000685131Re-query CCDS DB by Protein ID:ENSP00000508837
Original member Current member EBI ENST00000692411.1 ENSP00000508939.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692411.1Link to Ensembl Protein Viewer:ENSP00000508939.1Re-query CCDS DB by Nucleotide ID:ENST00000692411Re-query CCDS DB by Protein ID:ENSP00000508939
Original member Current member EBI ENST00000690812.1 ENSP00000509287.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000690812.1Link to Ensembl Protein Viewer:ENSP00000509287.1Re-query CCDS DB by Nucleotide ID:ENST00000690812Re-query CCDS DB by Protein ID:ENSP00000509287
Original member Current member EBI ENST00000689757.1 ENSP00000509312.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689757.1Link to Ensembl Protein Viewer:ENSP00000509312.1Re-query CCDS DB by Nucleotide ID:ENST00000689757Re-query CCDS DB by Protein ID:ENSP00000509312
Original member Current member EBI ENST00000691353.1 ENSP00000509759.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691353.1Link to Ensembl Protein Viewer:ENSP00000509759.1Re-query CCDS DB by Nucleotide ID:ENST00000691353Re-query CCDS DB by Protein ID:ENSP00000509759
Original member Current member EBI ENST00000691161.1 ENSP00000510109.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691161.1Link to Ensembl Protein Viewer:ENSP00000510109.1Re-query CCDS DB by Nucleotide ID:ENST00000691161Re-query CCDS DB by Protein ID:ENSP00000510109
Original member Current member EBI ENST00000687785.1 ENSP00000510219.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687785.1Link to Ensembl Protein Viewer:ENSP00000510219.1Re-query CCDS DB by Nucleotide ID:ENST00000687785Re-query CCDS DB by Protein ID:ENSP00000510219
Original member Current member EBI ENST00000693325.1 ENSP00000510558.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000693325.1Link to Ensembl Protein Viewer:ENSP00000510558.1Re-query CCDS DB by Nucleotide ID:ENST00000693325Re-query CCDS DB by Protein ID:ENSP00000510558
Original member Current member EBI ENST00000689858.1 ENSP00000510663.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689858.1Link to Ensembl Protein Viewer:ENSP00000510663.1Re-query CCDS DB by Nucleotide ID:ENST00000689858Re-query CCDS DB by Protein ID:ENSP00000510663
Original member Current member NCBI NM_001322903.2 NP_001309832.1 Accepted alive Link to Nucleotide Sequence:NM_001322903.2Link to Protein Sequence:NP_001309832.1Re-query CCDS DB by Nucleotide ID:NM_001322903Re-query CCDS DB by Protein ID:NP_001309832Link to BLAST:NP_001309832.1
Original member Current member NCBI NM_001322904.2 NP_001309833.1 Accepted alive Link to Nucleotide Sequence:NM_001322904.2Link to Protein Sequence:NP_001309833.1Re-query CCDS DB by Nucleotide ID:NM_001322904Re-query CCDS DB by Protein ID:NP_001309833Link to BLAST:NP_001309833.1
Original member Current member NCBI NM_001322905.2 NP_001309834.1 Accepted alive Link to Nucleotide Sequence:NM_001322905.2Link to Protein Sequence:NP_001309834.1Re-query CCDS DB by Nucleotide ID:NM_001322905Re-query CCDS DB by Protein ID:NP_001309834Link to BLAST:NP_001309834.1
Original member Current member NCBI NM_001322906.2 NP_001309835.1 Accepted alive Link to Nucleotide Sequence:NM_001322906.2Link to Protein Sequence:NP_001309835.1Re-query CCDS DB by Nucleotide ID:NM_001322906Re-query CCDS DB by Protein ID:NP_001309835Link to BLAST:NP_001309835.1
Original member Current member NCBI NM_001322907.2 NP_001309836.1 Accepted alive Link to Nucleotide Sequence:NM_001322907.2Link to Protein Sequence:NP_001309836.1Re-query CCDS DB by Nucleotide ID:NM_001322907Re-query CCDS DB by Protein ID:NP_001309836Link to BLAST:NP_001309836.1
Original member Current member NCBI NM_001322908.2 NP_001309837.1 Accepted alive Link to Nucleotide Sequence:NM_001322908.2Link to Protein Sequence:NP_001309837.1Re-query CCDS DB by Nucleotide ID:NM_001322908Re-query CCDS DB by Protein ID:NP_001309837Link to BLAST:NP_001309837.1
Original member Current member NCBI NM_001322909.2 NP_001309838.1 Accepted alive Link to Nucleotide Sequence:NM_001322909.2Link to Protein Sequence:NP_001309838.1Re-query CCDS DB by Nucleotide ID:NM_001322909Re-query CCDS DB by Protein ID:NP_001309838Link to BLAST:NP_001309838.1
Original member Current member NCBI NM_001322910.2 NP_001309839.1 Accepted alive Link to Nucleotide Sequence:NM_001322910.2Link to Protein Sequence:NP_001309839.1Re-query CCDS DB by Nucleotide ID:NM_001322910Re-query CCDS DB by Protein ID:NP_001309839Link to BLAST:NP_001309839.1
Original member Current member NCBI NM_130811.4 NP_570824.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_130811.4Link to Protein Sequence:NP_570824.1Re-query CCDS DB by Nucleotide ID:NM_130811Re-query CCDS DB by Protein ID:NP_570824Link to BLAST:NP_570824.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309832.1 206 P60880 206 100% 0 0
NP_001309833.1 206 P60880 206 100% 0 0
NP_001309834.1 206 P60880 206 100% 0 0
NP_001309835.1 206 P60880 206 100% 0 0
NP_001309836.1 206 P60880 206 100% 0 0
NP_001309837.1 206 P60880 206 100% 0 0
NP_001309838.1 206 P60880 206 100% 0 0
NP_001309839.1 206 P60880 206 100% 0 0
NP_570824.1 206 P60880 206 100% 0 0

Chromosomal Locations for CCDS 13110.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 10275492 10275563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10277685 10277726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10284724 10284772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10293161 10293278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10296925 10297050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10299268 10299412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10306129 10306197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGCCGAAGACGCAGACATGCGCAATGAGCTGGAGGAGATGCAGCGAAGGGCTGACCAGTTGGCTGATG
AGTCGCTGGAAAGCACCCGTCGTATGCTGCAACTGGTTGAAGAGAGTAAAGATGCTGGTATCAGGACTTT
GGTTATGTTGGATGAACAAGGAGAACAACTGGAACGCATTGAGGAAGGGATGGACCAAATCAATAAGGAC
ATGAAAGAAGCAGAAAAGAATTTGACGGACCTAGGAAAATTCTGCGGGCTTTGTGTGTGTCCCTGTAACA
AGCTTAAATCAAGTGATGCTTACAAAAAAGCCTGGGGCAATAATCAGGACGGAGTGGTGGCCAGCCAGCC
TGCTCGTGTAGTGGACGAACGGGAGCAGATGGCCATCAGTGGCGGCTTCATCCGCAGGGTAACAAATGAT
GCCCGAGAAAATGAAATGGATGAAAACCTAGAGCAGGTGAGCGGCATCATCGGGAACCTCCGTCACATGG
CCCTGGATATGGGCAATGAGATCGATACACAGAATCGCCAGATCGACAGGATCATGGAGAAGGCTGATTC
CAACAAAACCAGAATTGATGAGGCCAACCAACGTGCAACAAAGATGCTGGGAAGTGGTTAA

Translation (206 aa):
MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKD
MKEAEKNLTDLGKFCGLCVCPCNKLKSSDAYKKAWGNNQDGVVASQPARVVDEREQMAISGGFIRRVTND
ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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