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Report for CCDS13109.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13109.1 Public Homo sapiens 20 SNAP25 24 110 108 CCDS HistoryNCBI Gene:6616Re-query CCDS DB by CCDS ID:13109.1Re-query CCDS DB by GeneID:6616See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13109.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304886.6 ENSP00000307341.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000304886.6Link to Ensembl Protein Viewer:ENSP00000307341.2Re-query CCDS DB by Nucleotide ID:ENST00000304886Re-query CCDS DB by Protein ID:ENSP00000307341
Original member Current member EBI ENST00000706269.1 ENSP00000516314.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000706269.1Link to Ensembl Protein Viewer:ENSP00000516314.1Re-query CCDS DB by Nucleotide ID:ENST00000706269Re-query CCDS DB by Protein ID:ENSP00000516314
Original member Current member NCBI NM_001322902.2 NP_001309831.1 Accepted alive Link to Nucleotide Sequence:NM_001322902.2Link to Protein Sequence:NP_001309831.1Re-query CCDS DB by Nucleotide ID:NM_001322902Re-query CCDS DB by Protein ID:NP_001309831Link to BLAST:NP_001309831.1
Original member Current member NCBI NM_003081.5 NP_003072.2 Accepted alive Link to Nucleotide Sequence:NM_003081.5Link to Protein Sequence:NP_003072.2Re-query CCDS DB by Nucleotide ID:NM_003081Re-query CCDS DB by Protein ID:NP_003072Link to BLAST:NP_003072.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309831.1 206 P60880-2 206 100% 0 0
NP_003072.2 206 P60880-2 206 100% 0 0

Chromosomal Locations for CCDS 13109.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 10275492 10275563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10277685 10277726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10284724 10284772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10292882 10292999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10296925 10297050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10299268 10299412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10306129 10306197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGCCGAAGACGCAGACATGCGCAATGAGCTGGAGGAGATGCAGCGAAGGGCTGACCAGTTGGCTGATG
AGTCGCTGGAAAGCACCCGTCGTATGCTGCAACTGGTTGAAGAGAGTAAAGATGCTGGTATCAGGACTTT
GGTTATGTTGGATGAACAAGGAGAACAACTCGATCGTGTCGAAGAAGGCATGAACCATATCAACCAAGAC
ATGAAGGAGGCTGAGAAAAATTTAAAAGATTTAGGGAAATGCTGTGGCCTTTTCATATGTCCTTGTAACA
AGCTTAAATCAAGTGATGCTTACAAAAAAGCCTGGGGCAATAATCAGGACGGAGTGGTGGCCAGCCAGCC
TGCTCGTGTAGTGGACGAACGGGAGCAGATGGCCATCAGTGGCGGCTTCATCCGCAGGGTAACAAATGAT
GCCCGAGAAAATGAAATGGATGAAAACCTAGAGCAGGTGAGCGGCATCATCGGGAACCTCCGTCACATGG
CCCTGGATATGGGCAATGAGATCGATACACAGAATCGCCAGATCGACAGGATCATGGAGAAGGCTGATTC
CAACAAAACCAGAATTGATGAGGCCAACCAACGTGCAACAAAGATGCTGGGAAGTGGTTAA

Translation (206 aa):
MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQD
MKEAEKNLKDLGKCCGLFICPCNKLKSSDAYKKAWGNNQDGVVASQPARVVDEREQMAISGGFIRRVTND
ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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