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Report for CCDS13052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13052.1 Public Homo sapiens 20 SLC4A11 24 110 108 CCDS HistoryNCBI Gene:83959Re-query CCDS DB by CCDS ID:13052.1Re-query CCDS DB by GeneID:83959See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13052.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380056.7 ENSP00000369396.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380056.7Link to Ensembl Protein Viewer:ENSP00000369396.3Re-query CCDS DB by Nucleotide ID:ENST00000380056Re-query CCDS DB by Protein ID:ENSP00000369396
Original member Current member NCBI NM_032034.4 NP_114423.1 Accepted alive Link to Nucleotide Sequence:NM_032034.4Link to Protein Sequence:NP_114423.1Re-query CCDS DB by Nucleotide ID:NM_032034Re-query CCDS DB by Protein ID:NP_114423Link to BLAST:NP_114423.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114423.1 891 Q8NBS3-1 891 100% 0 0

Chromosomal Locations for CCDS 13052.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 3227787 3227856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3228259 3228428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3228512 3228707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3228838 3229011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3229095 3229263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3229346 3229452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3229524 3229776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3230187 3230260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3230515 3230647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3230732 3230845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3230933 3231058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3231149 3231242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3231330 3231548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3233514 3233637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3233921 3234002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3234083 3234314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3234568 3234617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3234742 3234894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3237544 3237679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2676 nt):
ATGAGCCAGGTCGGGGGGCGGGGAGACAGGTGCACACAGGAGGTCCAGGGCTTGGTCCATGGGGCTGGTG
ACCTTTCTGCTTCCCTTGCAGAAAACTCTCCCACCATGTCGCAGAATGGATACTTCGAGGATTCAAGCTA
CTACAAGTGTGACACAGATGACACCTTCGAAGCCCGAGAGGAGATCCTGGGGGATGAGGCCTTCGACACT
GCCAACTCCTCCATCGTGTCTGGCGAGAGTATCCGTTTTTTTGTCAATGTCAACCTTGAGATGCAGGCCA
CCAACACTGAGAATGAAGCGACTTCCGGTGGCTGTGTGCTCCTGCACACCTCCCGAAAGTACCTGAAGTT
AAAGAACTTCAAGGAAGAGATCCGTGCGCACCGCGACCTAGATGGCTTCCTGGCGCAGGCCAGCATCGTC
CTGAACGAGACGGCCACCTCCCTGGATAACGTGCTGCGGACCATGCTTCGCCGCTTCGCCAGGGACCCTG
ACAACAATGAGCCCAACTGCAACCTGGACCTGCTCATGGCCATGCTCTTCACCGATGCCGGGGCACCCAT
GCGGGGTAAAGTCCACCTGCTGTCAGATACCATCCAAGGGGTCACCGCCACAGTGACAGGGGTGCGGTAC
CAGCAGTCGTGGCTCTGCATCATCTGTACCATGAAGGCCCTACAGAAGCGGCACGTGTGCATCAGCCGCC
TGGTTCGCCCACAGAACTGGGGGGAGAATTCCTGTGAGGTTCGGTTCGTCATCCTGGTGCTGGCCCCACC
CAAGATGAAAAGCACTAAGACTGCGATGGAGGTGGCGCGCACGTTTGCCACCATGTTCTCGGATATCGCC
TTCCGCCAGAAGCTCCTGGAGACCCGCACAGAGGAGGAATTCAAGGAGGCCTTGGTGCATCAGAGACAGC
TGCTCACCATGGTGAGCCACGGTCCAGTGGCGCCGAGAACGAAGGAACGCAGCACAGTCTCCCTCCCTGC
CCACAGACACCCAGAGCCCCCAAAGTGCAAGGACTTTGTCCCTTTTGGGAAGGGCATCCGGGAGGACATC
GCACGCAGGTTCCCCTTGTACCCCTTGGACTTCACTGATGGCATTATTGGGAAAAACAAGGCTGTGGGCA
AATACATCACCACCACCCTGTTCCTCTACTTCGCCTGCCTCCTGCCCACCATCGCTTTCGGGTCTCTCAA
TGACGAGAACACAGACGGGGCCATCGACGTGCAGAAGACCATAGCCGGGCAGAGCATCGGGGGCCTGCTC
TACGCGCTCTTCTCTGGGCAGCCATTGGTGATTCTGCTGACCACCGCGCCCCTGGCGCTCTACATCCAGG
TGATTCGTGTCATCTGTGATGACTATGACCTGGACTTCAACTCCTTCTACGCATGGACGGGCCTGTGGAA
TAGTTTCTTCCTTGCGCTTTATGCCTTTTTCAACCTCAGCCTGGTCATGAGTCTCTTCAAGAGGTCGACG
GAGGAGATCATCGCCCTCTTCATTTCCATCACGTTTGTGCTGGATGCCGTCAAGGGCACGGTTAAAATCT
TCTGGAAGTACTACTATGGGCATTACTTGGACGACTATCACACAAAAAGGACTTCATCCCTTGTCAGCCT
GTCAGGCCTCGGCGCCAGCCTCAACGCCAGCCTCCACACTGCCCTCAACGCCAGCTTCCTCGCCAGCCCC
ACGGAGCTGCCCTCGGCCACACACTCAGGCCAGGCGACCGCCGTGCTCAGCCTCCTCATCATGCTGGGCA
CGCTCTGGCTGGGCTACACCCTCTACCAATTCAAGAAGAGCCCCTACCTGCACCCCTGCGTGCGAGAGAT
CCTGTCCGACTGCGCCCTGCCCATCGCGGTGCTCGCCTTCTCCCTCATCAGCTCCCATGGCTTCCGGGAA
ATCGAGATGAGCAAGTTCCGCTACAACCCCAGCGAGAGCCCCTTTGCGATGGCGCAGATCCAGTCGCTGT
CCCTGAGGGCCGTCAGCGGTGCCATGGGCCTCGGCTTCCTGCTGTCCATGCTCTTCTTCATCGAGCAGAA
CTTGGTGGCCGCCTTGGTGAATGCACCGGAGAACAGGCTGGTGAAGGGCACTGCCTACCACTGGGACCTC
CTGCTCCTCGCCATCATCAACACAGGGCTGTCTCTGTTTGGGCTGCCTTGGATCCATGCCGCCTACCCCC
ACTCCCCGCTGCACGTGCGAGCCCTGGCCTTAGTGGAGGAGCGTGTGGAGAACGGACACATCTATGACAC
GATTGTGAACGTGAAGGAGACGCGGCTGACCTCGCTGGGCGCCAGCGTCCTGGTGGGCCTGTCCCTGTTG
CTGCTGCCGGTCCCGCTTCAGTGGATCCCCAAGCCCGTGCTCTATGGCCTCTTCCTCTACATCGCGCTCA
CCTCCCTCGATGGCAACCAGCTCGTCCAGCGCGTGGCCCTGCTGCTCAAGGAGCAGACTGCGTACCCCCC
GACACACTACATCCGGAGGGTGCCCCAGAGGAAGATCCACTACTTCACGGGCCTGCAGGTGCTTCAGCTG
CTGCTGCTGTGTGCCTTCGGCATGAGCTCCCTGCCCTACATGAAGATGATCTTTCCCCTCATCATGATCG
CCATGATCCCCATCCGCTATATCCTGCTGCCCCGAATCATTGAAGCCAAGTACTTGGATGTCATGGACGC
TGAGCACAGGCCTTGA

Translation (891 aa):
MSQVGGRGDRCTQEVQGLVHGAGDLSASLAENSPTMSQNGYFEDSSYYKCDTDDTFEAREEILGDEAFDT
ANSSIVSGESIRFFVNVNLEMQATNTENEATSGGCVLLHTSRKYLKLKNFKEEIRAHRDLDGFLAQASIV
LNETATSLDNVLRTMLRRFARDPDNNEPNCNLDLLMAMLFTDAGAPMRGKVHLLSDTIQGVTATVTGVRY
QQSWLCIICTMKALQKRHVCISRLVRPQNWGENSCEVRFVILVLAPPKMKSTKTAMEVARTFATMFSDIA
FRQKLLETRTEEEFKEALVHQRQLLTMVSHGPVAPRTKERSTVSLPAHRHPEPPKCKDFVPFGKGIREDI
ARRFPLYPLDFTDGIIGKNKAVGKYITTTLFLYFACLLPTIAFGSLNDENTDGAIDVQKTIAGQSIGGLL
YALFSGQPLVILLTTAPLALYIQVIRVICDDYDLDFNSFYAWTGLWNSFFLALYAFFNLSLVMSLFKRST
EEIIALFISITFVLDAVKGTVKIFWKYYYGHYLDDYHTKRTSSLVSLSGLGASLNASLHTALNASFLASP
TELPSATHSGQATAVLSLLIMLGTLWLGYTLYQFKKSPYLHPCVREILSDCALPIAVLAFSLISSHGFRE
IEMSKFRYNPSESPFAMAQIQSLSLRAVSGAMGLGFLLSMLFFIEQNLVAALVNAPENRLVKGTAYHWDL
LLLAIINTGLSLFGLPWIHAAYPHSPLHVRALALVEERVENGHIYDTIVNVKETRLTSLGASVLVGLSLL
LLPVPLQWIPKPVLYGLFLYIALTSLDGNQLVQRVALLLKEQTAYPPTHYIRRVPQRKIHYFTGLQVLQL
LLLCAFGMSSLPYMKMIFPLIMIAMIPIRYILLPRIIEAKYLDVMDAEHRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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