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Report for CCDS13022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13022.1 Public Homo sapiens 20 SIRPA 24 110 108 CCDS HistoryNCBI Gene:140885Re-query CCDS DB by CCDS ID:13022.1Re-query CCDS DB by GeneID:140885See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13022.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356025.7 ENSP00000348307.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356025.7Link to Ensembl Protein Viewer:ENSP00000348307.3Re-query CCDS DB by Nucleotide ID:ENST00000356025Re-query CCDS DB by Protein ID:ENSP00000348307
Original member Current member EBI ENST00000358771.5 ENSP00000351621.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358771.5Link to Ensembl Protein Viewer:ENSP00000351621.4Re-query CCDS DB by Nucleotide ID:ENST00000358771Re-query CCDS DB by Protein ID:ENSP00000351621
Original member Current member EBI ENST00000400068.7 ENSP00000382941.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400068.7Link to Ensembl Protein Viewer:ENSP00000382941.4Re-query CCDS DB by Nucleotide ID:ENST00000400068Re-query CCDS DB by Protein ID:ENSP00000382941
Original member Current member NCBI NM_001040022.1 NP_001035111.1 Accepted alive Link to Nucleotide Sequence:NM_001040022.1Link to Protein Sequence:NP_001035111.1Re-query CCDS DB by Nucleotide ID:NM_001040022Re-query CCDS DB by Protein ID:NP_001035111Link to BLAST:NP_001035111.1
Original member Current member NCBI NM_001040023.2 NP_001035112.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040023.2Link to Protein Sequence:NP_001035112.1Re-query CCDS DB by Nucleotide ID:NM_001040023Re-query CCDS DB by Protein ID:NP_001035112Link to BLAST:NP_001035112.1
Original member Current member NCBI NM_080792.3 NP_542970.1 Accepted alive Link to Nucleotide Sequence:NM_080792.3Link to Protein Sequence:NP_542970.1Re-query CCDS DB by Nucleotide ID:NM_080792Re-query CCDS DB by Protein ID:NP_542970Link to BLAST:NP_542970.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035111.1 504 P78324-1 504 100% 0 0
NP_001035112.1 504 P78324-1 504 100% 0 0
NP_542970.1 504 P78324-1 504 100% 0 0

Chromosomal Locations for CCDS 13022.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 1895448 1895526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1915099 1915455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1921395 1921712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1922313 1922645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1924764 1924877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1927875 1927899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1934715 1934754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1937320 1937568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGAGCCCGCCGGCCCGGCCCCCGGCCGCCTCGGGCCGCTGCTCTGCCTGCTGCTCGCCGCGTCCTGCG
CCTGGTCAGGAGTGGCGGGTGAGGAGGAGCTGCAGGTGATTCAGCCTGACAAGTCCGTGTTGGTTGCAGC
TGGAGAGACAGCCACTCTGCGCTGCACTGCGACCTCTCTGATCCCTGTGGGGCCCATCCAGTGGTTCAGA
GGAGCTGGACCAGGCCGGGAATTAATCTACAATCAAAAAGAAGGCCACTTCCCCCGGGTAACAACTGTTT
CAGACCTCACAAAGAGAAACAACATGGACTTTTCCATCCGCATCGGTAACATCACCCCAGCAGATGCCGG
CACCTACTACTGTGTGAAGTTCCGGAAAGGGAGCCCCGATGACGTGGAGTTTAAGTCTGGAGCAGGCACT
GAGCTGTCTGTGCGCGCCAAACCCTCTGCCCCCGTGGTATCGGGCCCTGCGGCGAGGGCCACACCTCAGC
ACACAGTGAGCTTCACCTGCGAGTCCCACGGCTTCTCACCCAGAGACATCACCCTGAAATGGTTCAAAAA
TGGGAATGAGCTCTCAGACTTCCAGACCAACGTGGACCCCGTAGGAGAGAGCGTGTCCTACAGCATCCAC
AGCACAGCCAAGGTGGTGCTGACCCGCGAGGACGTTCACTCTCAAGTCATCTGCGAGGTGGCCCACGTCA
CCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAACTTGTCTGAGACCATCCGAGTTCCACCCACCTTGGA
GGTTACTCAACAGCCCGTGAGGGCAGAGAACCAGGTGAATGTCACCTGCCAGGTGAGGAAGTTCTACCCC
CAGAGACTACAGCTGACCTGGTTGGAGAATGGAAACGTGTCCCGGACAGAAACGGCCTCAACCGTTACAG
AGAACAAGGATGGTACCTACAACTGGATGAGCTGGCTCCTGGTGAATGTATCTGCCCACAGGGATGATGT
GAAGCTCACCTGCCAGGTGGAGCATGACGGGCAGCCAGCGGTCAGCAAAAGCCATGACCTGAAGGTCTCA
GCCCACCCGAAGGAGCAGGGCTCAAATACCGCCGCTGAGAACACTGGATCTAATGAACGGAACATCTATA
TTGTGGTGGGTGTGGTGTGCACCTTGCTGGTGGCCCTACTGATGGCGGCCCTCTACCTCGTCCGAATCAG
ACAGAAGAAAGCCCAGGGCTCCACTTCTTCTACAAGGTTGCATGAGCCCGAGAAGAATGCCAGAGAAATA
ACACAGGACACAAATGATATCACATATGCAGACCTGAACCTGCCCAAGGGGAAGAAGCCTGCTCCCCAGG
CTGCGGAGCCCAACAACCACACGGAGTATGCCAGCATTCAGACCAGCCCGCAGCCCGCGTCGGAGGACAC
CCTCACCTATGCTGACCTGGACATGGTCCACCTCAACCGGACCCCCAAGCAGCCGGCCCCCAAGCCTGAG
CCGTCCTTCTCAGAGTACGCCAGCGTCCAGGTCCCGAGGAAGTGA

Translation (504 aa):
MEPAGPAPGRLGPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFR
GAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDVEFKSGAGT
ELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIH
STAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYP
QRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVS
AHPKEQGSNTAAENTGSNERNIYIVVGVVCTLLVALLMAALYLVRIRQKKAQGSTSSTRLHEPEKNAREI
TQDTNDITYADLNLPKGKKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDMVHLNRTPKQPAPKPE
PSFSEYASVQVPRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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