CCDS Home FTP Process Releases & Statistics
Collaborators EBI HGNC MGI NCBI
Contact Us email CCDS
Genome Displays Related Resources Gene HomoloGene MANE RefSeq
|
|
Report for CCDS12995.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
12995.1 |
Public |
Homo sapiens |
20 |
SOX12 |
24 |
110 |
108 |
|
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 12995.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
|
|
EBI |
ENST00000342665.5 |
ENSP00000347646.1 |
MANE Select |
Accepted |
alive |
|
|
|
NCBI |
NM_006943.4 |
NP_008874.2 |
MANE Select |
Accepted |
alive |
|
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_008874.2 |
315 |
O15370 |
315 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 12995.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (948 nt): ATGGTGCAGCAGCGGGGCGCGAGGGCCAAGCGGGACGGCGGGCCGCCGCCCCCGGGACCCGGGCCGGCCG AGGAGGGGGCGCGCGAGCCCGGCTGGTGCAAGACCCCGAGCGGCCACATCAAGAGGCCGATGAACGCATT CATGGTGTGGTCGCAGCACGAACGGCGGAAGATCATGGACCAGTGGCCCGACATGCACAACGCCGAGATC TCCAAGCGCCTGGGCCGCCGCTGGCAGCTGCTGCAGGACTCGGAGAAGATCCCGTTCGTGCGGGAGGCGG AGCGGCTGCGGCTCAAGCACATGGCGGATTACCCGGACTACAAGTACCGGCCGCGCAAAAAGAGCAAGGG GGCGCCCGCCAAGGCGCGGCCCCGCCCCCCCGGTGGTAGCGGTGGCGGCAGCCGGCTCAAGCCCGGGCCG CAGCTGCCTGGCCGCGGGGGCCGCCGAGCAGCGGGAGGGCCTTTGGGGGGCGGGGCGGCGGCGCCCGAGG ACGACGATGAAGACGACGACGAGGAGCTGCTGGAAGTGCGCCTGGTCGAGACCCCGGGGCGGGAGCTGTG GAGGATGGTCCCGGCGGGACGGGCCGCTCGGGGACAAGCGGAGCGCGCCCAAGGGCCGTCGGGCGAGGGG GCGGCCGCCGCCGCCGCCGCCTCCCCGACACCGTCGGAGGACGAGGAGCCGGAGGAAGAGGAGGAGGAGG CGGCAGCGGCTGAGGAAGGTGAAGAGGAGACGGTGGCGTCGGGGGAGGAGTCGCTGGGCTTTCTGTCCAG GCTGCCCCCTGGCCCGGCCGGCCTGGACTGCAGCGCCCTGGATCGCGACCCGGACCTGCAGCCTCCCTCG GGCACGTCGCACTTCGAGTTCCCGGACTACTGCACCCCCGAGGTTACCGAGATGATCGCGGGGGACTGGC GCCCGTCTAGCATCGCAGACCTGGTTTTCACCTACTGA
Translation (315 aa): MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEI SKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPPGGSGGGSRLKPGP QLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSGEG AAAAAAASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGFLSRLPPGPAGLDCSALDRDPDLQPPS GTSHFEFPDYCTPEVTEMIAGDWRPSSIADLVFTY
|