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Report for CCDS12994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12994.1 Public Homo sapiens 20 C20orf96 24 110 108 CCDS HistoryNCBI Gene:140680Re-query CCDS DB by CCDS ID:12994.1Re-query CCDS DB by GeneID:140680See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12994.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360321.7 ENSP00000353470.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360321.7Link to Ensembl Protein Viewer:ENSP00000353470.2Re-query CCDS DB by Nucleotide ID:ENST00000360321Re-query CCDS DB by Protein ID:ENSP00000353470
Original member Current member NCBI NM_153269.3 NP_695001.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153269.3Link to Protein Sequence:NP_695001.2Re-query CCDS DB by Nucleotide ID:NM_153269Re-query CCDS DB by Protein ID:NP_695001Link to BLAST:NP_695001.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_695001.2 363 Q9NUD7 363 100% 0 0

Chromosomal Locations for CCDS 12994.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 271207 271267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 275968 276086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 276793 276879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 277044 277145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 277226 277383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 278330 278429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 279172 279330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 283963 284081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 289559 289676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 290259 290307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 290591 290610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGGCGCATGTCTTACAAAAACCCAAGCACTCTGGGACTCACTCCATAGTCCAGGAGTTCCAGGTTCCGG
ATTATGTTCCATGGCAGCAGTCCAAGCAGGAAACCAAGCCATCTACTCTGCCTCCAGTCCAACAAGCCAA
CAGCCTTCATACAAGCAAAATGAAGACTTTGACTAGGGTCCAACCAGTGTTTCACTTCAAGCCCACTACG
GTGGTGACAAGCTGCCAGCCGAAGAATCCAAGAGAACTACATAGAAGGCGGAAGTTGGACCCTGGGAAGA
TGCATGCCAAAATCTGGTTAATGAAGACCTCGCTCAGGAGCGGGAGGGCCGCTCTGCGAGAGCTCCGAAG
CCGTGAGAACTTCCTCAGCAAGCTCAACCGGGAGCTGATCGAGACCATCCAGGAGATGGAGAACAGCACG
ACCCTGCACGTGCGGGCCCTGCTGCAGCAGCAGGACACCCTGGCGACCATCATCGACATCTTGGAGTACT
CAAACAAGAAGAGGCTGCAGCAATTGAAATCTGAGCTTCAGGAGTGGGAAGAAAAGAAGAAATGCAAGAT
GAGCTATCTTGAGCAGCAGGCAGAGCAGCTGAATGCCAAGATTGAGAAGACCCAGGAGGAAGTGAACTTC
CTGAGCACTTACATGGACCATGAGTATTCCATCAAGTCTGTCCAGATCTCCACTCTTATGCGCCAGCTGC
AGCAGGTTAAGGACAGCCAGCAGGATGAGCTGGATGACCTCGGTGAGATGCGCAGAAAGGTCCTGGAATC
CTTGTCTGACAAGATTCAGAAGAAGAAGAAAAAAATTCTGAGTTCTGTGGTGGCGGAAACCCAGCGTCCC
TATGAAGAGGCTCTCCTACAGAAGATGTGGGAAAGCCAGGACTTCCTGAAATGCATGCAAAGGTTCAGAG
AAATTATTGACCAGTTTGAGGAGAACATGCCTGTATTAAGGGCCGAGGTGGAAGAGCTCCAAGCCCAGAC
CCGGGAACCCCGAGAGGTCATATTTGAGGATGTTCTGCTTCGGAGACCCAAGTGCACCCCAGACATGGAT
GTCATCCTCAACATTCCTGTGGAAGAGCCACTACCCTTCTAG

Translation (363 aa):
MAHVLQKPKHSGTHSIVQEFQVPDYVPWQQSKQETKPSTLPPVQQANSLHTSKMKTLTRVQPVFHFKPTT
VVTSCQPKNPRELHRRRKLDPGKMHAKIWLMKTSLRSGRAALRELRSRENFLSKLNRELIETIQEMENST
TLHVRALLQQQDTLATIIDILEYSNKKRLQQLKSELQEWEEKKKCKMSYLEQQAEQLNAKIEKTQEEVNF
LSTYMDHEYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAETQRP
YEEALLQKMWESQDFLKCMQRFREIIDQFEENMPVLRAEVEELQAQTREPREVIFEDVLLRRPKCTPDMD
VILNIPVEEPLPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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