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Report for CCDS1294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1294.1 Public Homo sapiens 1 FMO1 24 110 108 CCDS HistoryNCBI Gene:2326Re-query CCDS DB by CCDS ID:1294.1Re-query CCDS DB by GeneID:2326See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1294.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354841.4 ENSP00000346901.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354841.4Link to Ensembl Protein Viewer:ENSP00000346901.4Re-query CCDS DB by Nucleotide ID:ENST00000354841Re-query CCDS DB by Protein ID:ENSP00000346901
Original member Current member EBI ENST00000367750.7 ENSP00000356724.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367750.7Link to Ensembl Protein Viewer:ENSP00000356724.3Re-query CCDS DB by Nucleotide ID:ENST00000367750Re-query CCDS DB by Protein ID:ENSP00000356724
Original member Current member EBI ENST00000617670.6 ENSP00000481732.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000617670.6Link to Ensembl Protein Viewer:ENSP00000481732.1Re-query CCDS DB by Nucleotide ID:ENST00000617670Re-query CCDS DB by Protein ID:ENSP00000481732
Original member Current member NCBI NM_001282693.2 NP_001269622.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282693.2Link to Protein Sequence:NP_001269622.1Re-query CCDS DB by Nucleotide ID:NM_001282693Re-query CCDS DB by Protein ID:NP_001269622Link to BLAST:NP_001269622.1
Original member Current member NCBI NM_002021.3 NP_002012.1 Accepted alive Link to Nucleotide Sequence:NM_002021.3Link to Protein Sequence:NP_002012.1Re-query CCDS DB by Nucleotide ID:NM_002021Re-query CCDS DB by Protein ID:NP_002012Link to BLAST:NP_002012.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269622.1 532 Q01740-1 532 100% 0 0
NP_002012.1 532 Q01740-1 532 100% 0 0

Chromosomal Locations for CCDS 1294.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171258088 171258219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171267543 171267731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171275346 171275508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171278729 171278871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171280786 171280985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171281978 171282333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171283144 171283216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171285202 171285544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGGCCAAGCGAGTTGCCATTGTGGGAGCTGGGGTCAGCGGCCTGGCCTCCATCAAGTGCTGTCTGGAAG
AAGGACTGGAGCCCACCTGCTTTGAGAGGAGCGATGACCTTGGGGGGCTGTGGAGATTCACCGAACATGT
TGAAGAAGGCAGAGCCAGTCTCTACAAGTCTGTGGTTTCCAACAGCTGCAAGGAGATGTCTTGTTACTCA
GACTTTCCATTCCCAGAAGATTATCCAAACTATGTGCCAAATTCTCAATTCCTGGAATATCTCAAAATGT
ATGCAAACCACTTTGACCTTCTGAAACACATTCAATTCAAGACCAAAGTCTGCAGTGTAACAAAATGCTC
AGATTCTGCTGTCTCTGGCCAATGGGAGGTGGTCACTATGCATGAAGAGAAGCAAGAGTCAGCCATCTTT
GATGCTGTCATGGTCTGCACTGGCTTTCTTACTAATCCTTATTTGCCACTGGATTCCTTTCCAGGTATTA
ATGCCTTTAAAGGCCAGTACTTTCATAGCCGGCAATATAAGCATCCAGATATATTTAAGGACAAGAGAGT
CCTTGTGATTGGAATGGGAAATTCTGGCACAGACATTGCTGTGGAGGCCAGCCACCTGGCGGAAAAGGTG
TTCCTCAGCACCACCGGAGGGGGATGGGTGATCAGCCGAATCTTTGACTCGGGCTACCCATGGGACATGG
TGTTCATGACACGCTTTCAGAACATGTTGAGAAATTCCCTCCCAACCCCAATTGTGACTTGGTTGATGGA
GCGAAAGATAAACAACTGGCTCAATCATGCAAATTACGGCTTAATACCAGAAGACAGGACTCAGCTGAAA
GAGTTTGTGCTAAATGATGAGCTCCCAGGACGCATCATCACTGGGAAAGTGTTCATCAGGCCAAGCATAA
AAGAGGTAAAGGAAAACTCTGTCATATTTAACAATACTTCAAAGGAAGAGCCTATTGACATCATTGTCTT
TGCCACTGGATACACATTTGCTTTCCCCTTCCTTGATGAGTCTGTAGTGAAAGTTGAAGATGGCCAGGCC
TCACTGTACAAGTATATCTTCCCTGCACATCTGCAAAAGCCAACCCTGGCCATTATTGGCCTCATCAAAC
CCTTGGGCTCCATGATACCTACAGGAGAAACACAAGCTCGGTGGGCTGTTCGAGTCCTGAAAGGTGTAAA
TAAGTTACCACCACCAAGTGTCATGATAGAGGAAATTAATGCAAGGAAAGAAAACAAGCCCAGTTGGTTT
GGCTTGTGCTACTGCAAGGCTTTACAATCAGATTATATCACATACATAGATGAACTCCTGACCTATATCA
ATGCAAAACCCAACCTGTTCTCTATGCTCCTAACGGATCCACATCTGGCTCTGACCGTCTTCTTTGGCCC
ATGCTCACCATACCAGTTCCGCTTGACTGGCCCAGGAAAATGGGAAGGAGCCAGAAATGCCATCATGACC
CAGTGGGACCGAACATTCAAGGTCATCAAAGCTCGAGTTGTACAAGAGTCTCCATCTCCCTTTGAAAGTT
TTCTTAAAGTCTTTAGCTTTCTGGCTTTGCTTGTGGCTATTTTTCTGATTTTCCTATAA

Translation (532 aa):
MAKRVAIVGAGVSGLASIKCCLEEGLEPTCFERSDDLGGLWRFTEHVEEGRASLYKSVVSNSCKEMSCYS
DFPFPEDYPNYVPNSQFLEYLKMYANHFDLLKHIQFKTKVCSVTKCSDSAVSGQWEVVTMHEEKQESAIF
DAVMVCTGFLTNPYLPLDSFPGINAFKGQYFHSRQYKHPDIFKDKRVLVIGMGNSGTDIAVEASHLAEKV
FLSTTGGGWVISRIFDSGYPWDMVFMTRFQNMLRNSLPTPIVTWLMERKINNWLNHANYGLIPEDRTQLK
EFVLNDELPGRIITGKVFIRPSIKEVKENSVIFNNTSKEEPIDIIVFATGYTFAFPFLDESVVKVEDGQA
SLYKYIFPAHLQKPTLAIIGLIKPLGSMIPTGETQARWAVRVLKGVNKLPPPSVMIEEINARKENKPSWF
GLCYCKALQSDYITYIDELLTYINAKPNLFSMLLTDPHLALTVFFGPCSPYQFRLTGPGKWEGARNAIMT
QWDRTFKVIKARVVQESPSPFESFLKVFSFLALLVAIFLIFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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