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Report for CCDS12934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12934.1 Public Homo sapiens 19 NLRP9 24 110 108 CCDS HistoryNCBI Gene:338321Re-query CCDS DB by CCDS ID:12934.1Re-query CCDS DB by GeneID:338321See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12934.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332836.7 ENSP00000331857.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332836.7Link to Ensembl Protein Viewer:ENSP00000331857.2Re-query CCDS DB by Nucleotide ID:ENST00000332836Re-query CCDS DB by Protein ID:ENSP00000331857
Original member Current member NCBI NM_176820.4 NP_789790.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_176820.4Link to Protein Sequence:NP_789790.2Re-query CCDS DB by Nucleotide ID:NM_176820Re-query CCDS DB by Protein ID:NP_789790Link to BLAST:NP_789790.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789790.2 991 Q7RTR0-1 991 100% 0 0

Chromosomal Locations for CCDS 12934.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55708912 55709044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55711800 55711970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55712420 55712590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55715055 55715225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55716728 55716898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55723980 55724144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55729831 55729992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55731999 55733550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55738095 55738374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2976 nt):
ATGGCAGAATCTTTTTTTTCGGATTTTGGCTTGTTGTGGTATCTGAAGGAGCTCAGAAAGGAAGAGTTTT
GG
AAATTTAAGGAGCTCCTCAAACAACCTTTGGAGAAATTTGAACTCAAGCCAATCCCCTGGGCTGAGCT
G
AAGAAGGCCTCCAAAGAAGATGTAGCAAAGCTGCTGGACAAACATTACCCAGGAAAGCAGGCATGGGAG
GTA
ACACTGAACCTGTTTCTACAGATCAATAGGAAAGATCTCTGGACAAAGGCTCAGGAAGAGATGAGAA
AT
AAGCTAAACCCATACAGAAAGCATATGAAGGAAACATTTCAACTCATATGGGAGAAGGAAACCTGTCT
T
CACGTCCCTGAGCATTTCTACAAAGAAACCATGAAAAATGAGTATAAAGAATTGAATGACGCATATACT
GCT
GCGGCTAGACGACACACTGTGGTCCTGGAAGGTCCTGATGGAATTGGAAAAACAACCCTTTTAAGAA
AA
GTGATGTTGGACTGGGCAGAGGGAAACTTATGGAAGGACAGGTTCACATTTGTGTTTTTCCTCAATGT
C
TGTGAAATGAACGGTATCGCAGAGACCAGCTTACTGGAGCTCCTCTCTAGGGACTGGCCGGAGTCTTCA
GAG
AAGATCGAAGACATTTTTTCCCAGCCAGAGAGAATTCTGTTCATCATGGATGGCTTTGAGCAACTGA
AG
TTTAACTTACAACTTAAGGCTGACTTGAGCGATGATTGGAGGCAGCGGCAGCCAATGCCAATTATCCT
G
AGCAGTTTGTTGCAAAAAAAGATGCTTCCAGAATCCTCTCTCCTTATTGCATTAGGAAAACTGGCTATG
CAA
AAACACTATTTTATGTTGCGGCATCCAAAACTCATAAAGCTCTTAGGATTCAGTGAATCTGAAAAGA
AG
TCGTATTTCTCCTACTTCTTTGGTGAGAAGAGCAAAGCCCTGAAAGTCTTCAATTTTGTGAGAGATAA
T
GGGCCGCTGTTTATCTTGTGCCATAATCCCTTTACGTGCTGGTTGGTCTGTACTTGTGTGAAACAGAGG
CTA
GAGAGGGGAGAAGACCTTGAAATAAACTCCCAAAACACCACCTATTTATATGCATCCTTTTTAACAA
CT
GTATTCAAAGCAGGAAGTCAGAGTTTTCCACCTAAGGTGAACAGAGCCCGACTAAAAAGCCTGTGTGC
T
TTGGCTGCAGAGGGAATTTGGACATATACATTTGTATTTTCCCATGGGGATCTCCGGAGGAATGGGTTA
TCT
GAGTCTGAGGGCGTGATGTGGGTGGGTATGAGACTCCTCCAAAGGAGAGGGGACTGTTTTGCCTTCA
TG
CATCTGTGTATCCAAGAGTTTTGTGCCGCCATGTTTTATTTGCTCAAACGACCCAAAGACGATCCTAA
C
CCGGCCATTGGAAGCATAACCCAGCTTGTAAGAGCAAGTGTGGTTCAGCCTCAAACCCTCTTGACCCAG
GTG
GGGATATTCATGTTTGGAATTTCAACAGAAGAAATCGTCAGCATGCTGGAGACCTCCTTTGGTTTTC
CA
CTGTCAAAAGACCTAAAGCAGGAAATAACCCAATGCCTTGAAAGTTTAAGTCAATGTGAAGCTGATAG
G
GAAGCCATAGCTTTCCAGGAACTATTCATTGGTTTGTTTGAAACTCAGGAAAAAGAATTTGTAACCAAA
GTG
ATGAATTTCTTTGAAGAAGTTTTCATTTATATTGGTAACATAGAACATTTGGTAATAGCTTCATTCT
GC
CTGAAGCATTGTCAACATTTAACGACACTTCGCATGTGTGTGGAGAATATCTTTCCAGATGACTCAGG
A
TGCATCTCAGATTACAATGAGAAGCTCGTCTACTGGCGGGAGCTTTGCTCAATGTTCATTACCAACAAG
AAC
TTCCAGATTTTAGACATGGAAAATACCAGCCTCGATGATCCCTCCCTGGCGATTCTTTGCAAAGCGC
TG
GCTCAGCCTGTTTGTAAACTCCGAAAACTCATATTTACTTCTGTGTACTTTGGACATGATTCAGAATT
A
TTTAAGGCAGTTCTTCACAACCCTCATCTGAAACTTCTGAGCCTGTACGGCACTAGCCTCTCCCAGTCT
GAC
ATCAGACACCTGTGTGAGACGCTGAAACATCCAATGTGCAAGATAGAAGAGCTGATACTGGGAAAGT
GT
GACATCTCCAGTGAAGTTTGTGAAGACATCGCCTCCGTCCTGGCCTGCAACAGCAAGCTGAAACACCT
C
TCCTTGGTAGAAAATCCCTTGAGGGACGAAGGAATGACGTTGCTGTGTGAAGCCCTGAAGCACTCACAC
TGT
GCCCTGGAGAGGCTGATGTTGATGTACTGCTGTCTCACCTCTGTCTCCTGTGACTCCATTTCCGAAG
TC
CTCTTGTGCAGTAAGTCCCTGTCCCTCCTCGATCTGGGCTCAAATGCCCTGGAAGATAATGGAGTGGC
A
TCTCTGTGTGCAGCGCTGAAGCACCCAGGCTGCAGCATACGGGAGCTGTGGTTGATGGGCTGTTTCCTT
ACT
TCCGATTCCTGTAAGGACATTGCTGCTGTTCTTATTTGCAATGGGAAACTGAAGACCCTGAAACTTG
GG
CATAATGAAATAGGAGACACTGGTGTCAGACAGTTATGTGCAGCTTTGCAGCATCCTCACTGTAAATT
A
GAGTGTCTCGGGCTGCAAACGTGTCCGATCACCCGTGCCTGCTGCGACGACATCGCCGCAGCACTCATC
GCC
TGCAAAACACTGAGGAGCCTGAACCTCGACTGGATTGCCTTGGATGCTGATGCAGTGGTGGTGCTGT
GT
GAGGCATTGAGCCACCCGGACTGTGCCCTGCAGATGCTGGGGCTGCACAAATCTGGCTTTGATGAAGA
A
ACTCAGAAGATCCTGATGTCTGTGGAAGAAAAAATTCCCCATCTGACCATTTCACATGGACCTTGGATT
GAC
GAGGAATACAAGATCAGGGGTGTGCTCCTCTGA


Translation (991 aa):
MAESFFSDFGLLWYLKELRKEEFWKFKELLKQPLEKFELKPIPWAELKKASKEDVAKLLDKHYPGKQAWE
V
TLNLFLQINRKDLWTKAQEEMR
NKLNPYRKHMKETFQLIWEKETCLHVPEHFYKETMKNEYKELNDAYT
A
AARRHTVVLEGPDGIGKTTLLRKVMLDWAEGNLWKDRFTFVFFLNVCEMNGIAETSLLELLSRDWPESS
E
KIEDIFSQPERILFIMDGFEQLKFNLQLKADLSDDWRQRQPMPIILSSLLQKKMLPESSLLIALGKLAM
Q
KHYFMLRHPKLIKLLGFSESEKKSYFSYFFGEKSKALKVFNFVRDNGPLFILCHNPFTCWLVCTCVKQR
L
ERGEDLEINSQNTTYLYASFLTTVFKAGSQSFPPKVNRARLKSLCALAAEGIWTYTFVFSHGDLRRNGL
S
ESEGVMWVGMRLLQRRGDCFAFMHLCIQEFCAAMFYLLKRPKDDPNPAIGSITQLVRASVVQPQTLLTQ
V
GIFMFGISTEEIVSMLETSFGFPLSKDLKQEITQCLESLSQCEADREAIAFQELFIGLFETQEKEFVTK
V
MNFFEEVFIYIGNIEHLVIASFCLKHCQHLTTLRMCVENIFPDDSGCIS
DYNEKLVYWRELCSMFITNK
N
FQILDMENTSLDDPSLAILCKALAQPVCKLRKL
IFTSVYFGHDSELFKAVLHNPHLKLLSLYGTSLSQS
D
IRHLCETLKHPMCKIEEL
ILGKCDISSEVCEDIASVLACNSKLKHLSLVENPLRDEGMTLLCEALKHSH
C
ALERL
MLMYCCLTSVSCDSISEVLLCSKSLSLLDLGSNALEDNGVASLCAALKHPGCSIRELWLMGCFL
T
SDSCKDIAAVLICNGKLKTLKLGHNEIGDTGVRQLCAALQHPHCKLECL
GLQTCPITRACCDDIAAALI
A
CKTLRSLNLDWIALDADAVVVLCEALSHPDCALQML
GLHKSGFDEETQKILMSVEEKIPHLTISHGPWI
D
EEYKIRGVLL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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