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Report for CCDS12850.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12850.2 Public Homo sapiens 19 ZNF480 24 110 108 CCDS HistoryNCBI Gene:147657Re-query CCDS DB by CCDS ID:12850.2Re-query CCDS DB by GeneID:147657See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12850.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript data. Two possible start codons are present in this update, with the downstream AUG codon have a stronger Kozak signal. Due to leaky scanning by ribosomes, it is possible that some ribosomes may initiate translation from the upstream AUG codon while others start from the downstream AUG. Translation initiation from the downstream AUG would result in a protein that is 19 aa shorter at the N-terminus.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12850.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000468240.6 ENSP00000417424.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000468240.6Link to Ensembl Protein Viewer:ENSP00000417424.1Re-query CCDS DB by Nucleotide ID:ENST00000468240Re-query CCDS DB by Protein ID:ENSP00000417424
Original member Current member EBI ENST00000595962.6 ENSP00000471754.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000595962.6Link to Ensembl Protein Viewer:ENSP00000471754.1Re-query CCDS DB by Nucleotide ID:ENST00000595962Re-query CCDS DB by Protein ID:ENSP00000471754
Original member Current member NCBI NM_144684.4 NP_653285.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144684.4Link to Protein Sequence:NP_653285.2Re-query CCDS DB by Nucleotide ID:NM_144684Re-query CCDS DB by Protein ID:NP_653285Link to BLAST:NP_653285.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653285.2 535 Q8WV37-1 535 100% 0 0

Chromosomal Locations for CCDS 12850.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 52300413 52300484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52314153 52314279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52315834 52315962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52321579 52322858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGCTGTGTGATGAAAAAGCCCAGAAGAGAAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTC
AGGGACACTTAACATTCAGGGACGTGGCCATAGAATTCTCTCAGGCGGAGTGGAAATGCCTGGACCCTGC
ACAGAGGGCTTTATACAAGGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGAATCTCTCTT
CCTGACCTGAATATTAACTCCATGTTGGAGCAAAGGAGGGAGCCCTGGTCTGGTGAGAGTGAAGTGAAAA
TAGCAAAAAATTCAGATGGGAGGGAGTGCATCAAAGGTGTGAACACAGGGAGCAGCTATGCATTGGGAAG
CAATGCAGAAGACAAACCAATTAAAAAACAACTTGGAGTATCCTTTCACTTACATCTGTCTGAACTGGAG
CTATTTCCAGATGAAAGGGTAATAAATGGATGTAATCAAGTTGAAAACTTTATCAACCACAGTTCCTCTG
TTTCCTGTCTTCAAGAAATGTCTTCCAGTGTCAAAACCCCCATTTTTAATAGGAATGATTTTGATGATTC
TTCATTTCTCCCACAAGAACAGAAAGTACACCTTAGAGAAAAACCTTATGAATGTAATGAGCATAGCAAA
GTCTTTAGAGTATCTTCCAGCCTTACTAAACATCAAGTAATCCATACTGTAGAGAAACCTTACAAATGTA
ATTCATGCGGCAAGGTCTTTAGTCGCAATTCACACCTTGCAGAACATTGTAGAATTCATACTGGAGAGAA
ACCTTACAAATGTAATGTCTGTGGCAAGGTTTTTAGTTACAATTCAAACTTTGCACGACATCAAAGAATT
CATACCAGAGAGAAGCCGTATGAATGTAATGAATGTGGTAAAGTCTTCAGTAATAATTCTTACCTTGCAC
GACATCAAAGAATTCATGCTGAAGAGAAACCTTACAAATGTAATGAATGTGGTAAAGGCTTCAGTCATAA
GTCATCTCTAGCAAATCATTGGAGAATTTATACTGGAGAGAAGCCTTACAAATGTGATGAATGTGGCAAG
GCCTTCTATAGGATTGCGCTCCTTGTACGACATCAGAAAATTCATACTGGAGAGAAACCTTACAAATGTA
ATGAATGTGGAAAGGTCTTTATTCAAAATTCGCACCTAGCACAACATTGGAGAATTCATACAGGAGAGAA
ACCTTACAAATGTAATGAATGTGGAAAAGTATTTAATCAACTTTCAAATCTTGCACGACATCGAAGAATT
CATACTGGAGAGAAGCCTTACAAATGTAATGAATGTGGTAAAGCATTTAGTGAGTATTCAGGCCTTTCAG
CCCATCTTGTAATCCACACTGGAGAGAAGCCTTACAAATGTAGTGAATGTGGCAAGGCATTCAGACACAA
GTTATCACTAACCAATCATCAGAGAATCCATACTGGAGAAAGACCTTACAAATGTAATGAATGTGGCAAG
GTCTTCAATCGAATTGCACACCTTGCACGACATCGGAAAATTCATACTGGAGAGAAACCTTACAAATGTA
ATGAGTGTGGCAAGGCCTTTAGTCGCATTTCATACCTAGCACAACATTGGACAATTCATATGGGATAG

Translation (535 aa):
MLCDEKAQKRRKRKAKESGMALPQGHLTFRDVAIEFSQAEWKCLDPAQRALYKDVMLENYRNLVSLGISL
PDLNINSMLEQRREPWSGESEVKIAKNSDGRECIKGVNTGSSYALGSNAEDKPIKKQLGVSFHLHLSELE
LFPDERVINGCNQVENFINHSSSVSCLQEMSSSVKTPIFNRNDFDDSSFLPQEQKVHLREKPYECNEHSK
VFRVSSSLTKHQVIHTVEKPYKCNSCGKVFSRNSHLAEHCRIHTGEKPYKCNVCGKVFSYNSNFARHQRI
HTREKPYECNECGKVFSNNSYLARHQRIHAEEKPYKCNECGKGFSHKSSLANHWRIYTGEKPYKCDECGK
AFYRIALLVRHQKIHTGEKPYKCNECGKVFIQNSHLAQHWRIHTGEKPYKCNECGKVFNQLSNLARHRRI
HTGEKPYKCNECGKAFSEYSGLSAHLVIHTGEKPYKCSECGKAFRHKLSLTNHQRIHTGERPYKCNECGK
VFNRIAHLARHRKIHTGEKPYKCNECGKAFSRISYLAQHWTIHMG


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 Genome Browser Links:   Ensembl Genome Browser
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