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Report for CCDS12791.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12791.1 Public Homo sapiens 19 VRK3 24 110 108 CCDS HistoryNCBI Gene:51231Re-query CCDS DB by CCDS ID:12791.1Re-query CCDS DB by GeneID:51231See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12791.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316763.8 ENSP00000324636.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316763.8Link to Ensembl Protein Viewer:ENSP00000324636.2Re-query CCDS DB by Nucleotide ID:ENST00000316763Re-query CCDS DB by Protein ID:ENSP00000324636
Original member Current member EBI ENST00000599538.5 ENSP00000469880.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000599538.5Link to Ensembl Protein Viewer:ENSP00000469880.1Re-query CCDS DB by Nucleotide ID:ENST00000599538Re-query CCDS DB by Protein ID:ENSP00000469880
Original member Current member EBI ENST00000594948.5 ENSP00000473171.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000594948.5Link to Ensembl Protein Viewer:ENSP00000473171.1Re-query CCDS DB by Nucleotide ID:ENST00000594948Re-query CCDS DB by Protein ID:ENSP00000473171
Original member Current member NCBI NM_016440.4 NP_057524.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016440.4Link to Protein Sequence:NP_057524.3Re-query CCDS DB by Nucleotide ID:NM_016440Re-query CCDS DB by Protein ID:NP_057524Link to BLAST:NP_057524.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057524.3 474 Q8IV63-1 474 100% 0 0

Chromosomal Locations for CCDS 12791.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49979094 49979242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49980955 49981013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49988372 49988492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49989639 49989771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49992860 49992952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49994814 49994919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49995191 49995275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49997504 49997570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50000790 50000854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50007569 50007826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50009236 50009385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50016024 50016162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGATCTCCTTCTGTCCAGACTGTGGCAAAAGTATCCAAGCGGCATTCAAATTCTGCCCCTACTGTGGAA
ATTCTTTGCCTGTAGAGGAGCATGTAGGGTCCCAGACCTTTGTCAATCCACATGTGTCATCCTTCCAAGG
CTCAAAGAGAGGGCTGAACTCCAGTTTTGAAACCTCTCCTAAGAAAGTGAAATGGTCCAGCACCGTCACC
TCTCCCCGATTATCCCTCTTCTCAGATGGTGACAGTTCTGAGTCTGAAGATACTCTGAGTTCCTCTGAGA
GATCCAAAGGCTCCGGGAGCAGACCCCCAACCCCCAAAAGCAGCCCTCAGAAGACCAGGAAGAGCCCTCA
GGTGACCAGGGGTAGCCCTCAGAAGACCAGCTGTAGCCCTCAGAAGACCAGGCAGAGCCCTCAGACGCTG
AAGCGGAGCCGAGTGACCACCTCACTTGAAGCTTTGCCCACAGGGACAGTGCTGACAGACAAGAGTGGGC
GACAGTGGAAGCTGAAGTCCTTCCAGACCAGGGACAACCAGGGCATTCTCTATGAAGCTGCACCCACCTC
CACCCTCACCTGTGACTCAGGACCACAGAAGCAAAAGTTCTCACTCAAACTGGATGCCAAGGATGGGCGC
TTGTTCAATGAGCAGAACTTCTTCCAGCGGGCCGCCAAGCCTCTGCAAGTCAACAAGTGGAAGAAGCTGT
ACTCGACCCCACTGCTGGCCATCCCTACCTGCATGGGTTTCGGTGTTCACCAGGACAAATACAGGTTCTT
GGTGTTACCCAGCCTGGGGAGGAGCCTTCAGTCGGCCCTGGATGTCAGCCCAAAGCATGTGCTGTCAGAG
AGGTCTGTGCTGCAGGTGGCCTGCCGGCTGCTGGATGCCCTGGAGTTCCTCCATGAGAATGAGTATGTTC
ATGGAAATGTGACAGCTGAAAATATCTTTGTGGATCCAGAGGACCAGAGTCAGGTGACTTTGGCAGGCTA
TGGCTTCGCCTTCCGCTATTGCCCAAGTGGCAAACACGTGGCCTACGTGGAAGGCAGCAGGAGCCCTCAC
GAGGGGGACCTTGAGTTCATTAGCATGGACCTGCACAAGGGATGCGGGCCCTCCCGCCGCAGCGACCTCC
AGAGCCTGGGCTACTGCATGCTGAAGTGGCTCTACGGGTTTCTGCCATGGACAAATTGCCTTCCCAACAC
TGAGGACATCATGAAGCAAAAACAGAAGTTTGTTGATAAGCCGGGGCCCTTCGTGGGACCCTGCGGTCAC
TGGATCAGGCCCTCAGAGACCCTGCAGAAGTACCTGAAGGTGGTGATGGCCCTCACGTATGAGGAGAAGC
CGCCCTACGCCATGCTGAGGAACAACCTAGAAGCTTTGCTGCAGGATCTGCGTGTGTCTCCATATGACCC
CATTGGCCTCCCGATGGTGCCCTAG

Translation (474 aa):
MISFCPDCGKSIQAAFKFCPYCGNSLPVEEHVGSQTFVNPHVSSFQGSKRGLNSSFETSPKKVKWSSTVT
SPRLSLFSDGDSSESEDTLSSSERSKGSGSRPPTPKSSPQKTRKSPQVTRGSPQKTSCSPQKTRQSPQTL
KRSRVTTSLEALPTGTVLTDKSGRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGR
LFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSE
RSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPH
EGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGH
WIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLRVSPYDPIGLPMVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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