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Report for CCDS12782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12782.1 Public Homo sapiens 19 PTOV1 24 110 108 CCDS HistoryNCBI Gene:53635Re-query CCDS DB by CCDS ID:12782.1Re-query CCDS DB by GeneID:53635See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 12782.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391842.5 ENSP00000375717.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000391842.5Link to Ensembl Protein Viewer:ENSP00000375717.1Re-query CCDS DB by Nucleotide ID:ENST00000391842Re-query CCDS DB by Protein ID:ENSP00000375717
Original member Current member EBI ENST00000599732.5 ENSP00000469128.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000599732.5Link to Ensembl Protein Viewer:ENSP00000469128.1Re-query CCDS DB by Nucleotide ID:ENST00000599732Re-query CCDS DB by Protein ID:ENSP00000469128
Original member Current member EBI ENST00000601675.5 ENSP00000472816.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000601675.5Link to Ensembl Protein Viewer:ENSP00000472816.1Re-query CCDS DB by Nucleotide ID:ENST00000601675Re-query CCDS DB by Protein ID:ENSP00000472816
Original member Current member NCBI NM_001305105.2 NP_001292034.1 Accepted alive Link to Nucleotide Sequence:NM_001305105.2Link to Protein Sequence:NP_001292034.1Re-query CCDS DB by Nucleotide ID:NM_001305105Re-query CCDS DB by Protein ID:NP_001292034Link to BLAST:NP_001292034.1
Original member Current member NCBI NM_001394010.1 NP_001380939.1 Accepted alive Link to Nucleotide Sequence:NM_001394010.1Link to Protein Sequence:NP_001380939.1Re-query CCDS DB by Nucleotide ID:NM_001394010Re-query CCDS DB by Protein ID:NP_001380939Link to BLAST:NP_001380939.1
Original member Current member NCBI NM_017432.5 NP_059128.2 Accepted alive Link to Nucleotide Sequence:NM_017432.5Link to Protein Sequence:NP_059128.2Re-query CCDS DB by Nucleotide ID:NM_017432Re-query CCDS DB by Protein ID:NP_059128Link to BLAST:NP_059128.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292034.1 416 Q86YD1-1 416 100% 0 0
NP_001380939.1 416 Q86YD1-1 416 100% 0 0
NP_059128.2 416 Q86YD1-1 416 100% 0 0

Chromosomal Locations for CCDS 12782.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49851329 49851499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49854406 49854543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49854652 49854734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49854831 49854888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49854970 49855077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49856975 49857130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49857693 49857782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49857904 49857977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49858057 49858114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49858549 49858653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49859986 49860183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49860268 49860279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGGTCCGTCCGCGCCGTGCCCCGTACCGCTCCGGCGCCGGGGGCCCCCTCGGGGGTCGCGGCCGCCCTC
CGCGGCCCCTCGTGGTGCGCGCCGTCCGCTCGCGCTCCTGGCCTGCCAGCCCCCGAGGCCCGCAGCCTCC
GCGGATCCGGGCCCGCTCGGCCCCTCCCATGGAAGGTGCTCGGGTCTTCGGGGCACTGGGTCCCATCGGT
CCCTCCTCACCTGGGCTCACCCTCGGGGGTCTGGCCGTGAGCGAGCACCGGCTCAGCAACAAGCTGCTGG
CTTGGAGCGGCGTCCTCGAGTGGCAGGAGAAGCGCAGACCCTACTCTGACTCCACTGCAAAGCTGAAGCG
GACCCTGCCCTGCCAAGCCTACGTGAACCAAGGCGAGAACCTGGAGACCGACCAGTGGCCGCAGAAGCTG
ATCATGCAGCTGATCCCTCAGCAGCTGCTGACCACCCTGGGCCCCCTGTTCCGGAACTCCCAGTTGGCAC
AGTTCCACTTCACCAACAGAGACTGCGACTCGCTCAAGGGGCTCTGCCGCATCATGGGCAACGGCTTCGC
GGGCTGCATGCTGTTCCCCCACATCTCCCCCTGTGAGGTGCGCGTGCTCATGCTCCTGTACTCGTCCAAG
AAGAAGATCTTCATGGGCCTCATCCCCTACGACCAGAGCGGCTTCGTCAGTGCCATCCGGCAGGTCATCA
CCACCCGCAAGCAGGCAGTGGGACCTGGTGGTGTCAACTCAGGCCCAGTCCAGATCGTCAACAACAAGTT
TCTGGCATGGAGTGGTGTCATGGAGTGGCAGGAGCCCAGGCCTGAGCCCAACAGTCGGTCCAAGAGGTGG
CTGCCATCCCACGTCTACGTGAACCAGGGGGAGATCCTGAGGACCGAGCAGTGGCCAAGGAAGCTGTACA
TGCAGCTCATCCCGCAGCAGCTGCTGACCACCCTAGTGCCGCTGTTCCGGAACTCGCGCCTGGTCCAGTT
CCACTTCACCAAGGACCTGGAGACACTGAAGAGCCTGTGCCGGATCATGGACAATGGCTTCGCCGGCTGC
GTGCACTTTTCCTACAAAGCATCGTGTGAGATCCGCGTGCTTATGCTCCTGTACTCTTCAGAGAAGAAAA
TCTTCATTGGCCTCATCCCCCATGACCAGGGCAACTTTGTCAACGGCATCCGGCGTGTCATTGCCAACCA
GCAGCAGGTCCTGCAGCGGAACCTGGAGCAGGAGCAACAGCAACGAGGGATGGGGGGGTAG

Translation (416 aa):
MVRPRRAPYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVFGALGPIG
PSSPGLTLGGLAVSEHRLSNKLLAWSGVLEWQEKRRPYSDSTAKLKRTLPCQAYVNQGENLETDQWPQKL
IMQLIPQQLLTTLGPLFRNSQLAQFHFTNRDCDSLKGLCRIMGNGFAGCMLFPHISPCEVRVLMLLYSSK
KKIFMGLIPYDQSGFVSAIRQVITTRKQAVGPGGVNSGPVQIVNNKFLAWSGVMEWQEPRPEPNSRSKRW
LPSHVYVNQGEILRTEQWPRKLYMQLIPQQLLTTLVPLFRNSRLVQFHFTKDLETLKSLCRIMDNGFAGC
VHFSYKASCEIRVLMLLYSSEKKIFIGLIPHDQGNFVNGIRRVIANQQQVLQRNLEQEQQQRGMGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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