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Report for CCDS12716.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12716.1 Public Homo sapiens 19 TMEM143 24 110 108 CCDS HistoryNCBI Gene:55260Re-query CCDS DB by CCDS ID:12716.1Re-query CCDS DB by GeneID:55260See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12716.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293261.8 ENSP00000293261.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293261.8Link to Ensembl Protein Viewer:ENSP00000293261.2Re-query CCDS DB by Nucleotide ID:ENST00000293261Re-query CCDS DB by Protein ID:ENSP00000293261
Original member Current member NCBI NM_018273.4 NP_060743.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018273.4Link to Protein Sequence:NP_060743.2Re-query CCDS DB by Nucleotide ID:NM_018273Re-query CCDS DB by Protein ID:NP_060743Link to BLAST:NP_060743.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060743.2 459 Q96AN5-1 459 100% 0 0

Chromosomal Locations for CCDS 12716.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 48333219 48333433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48334008 48334197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48342530 48342809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48343321 48343451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48345160 48345354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48360072 48360176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48363291 48363531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48363898 48363920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGACAGTCGAGCTTTGGCTAAGGCTCCGGGGAAAGGGTCTAGCCATGCTGCATGTGACCCGGGGGGTCT
GGGGGTCCAGGGTCCGAGTATGGCCACTGTTGCCCGCGCTCCTCGGGCCCCCCCGGGCCCTCTCATCGCT
GGCAGCCAAAATGGGGGAGTATCGCAAGATGTGGAACCCCAGGGAGCCCCGCGACTGGGCCCAGCAGTAC
CGCGAGCGCTTCATTCCCTTCTCCAAGGAGCAGCTGCTCCGCCTCCTAATACAGGAATTCCACTCGAGTC
CGGCAGAGAAGGCGGCTTTGGAGGCGTTCTCGGCCCACGTGGACTTCTGCACCCTGTTCCACTACCACCA
AATCCTGGCCCGGCTGCAGGCCTTATATGACCCCATCAACCCTGACAGGGAGACCCTCGATCAGCCATCA
CTAACGGATCCCCAGCGTCTGTCTAATGAGCAGGAGGTGCTTCGGGCTCTGGAGCCCCTGCTGGCCCAGG
CCAACTTCTCCCCGCTGTCTGAGGACACCCTGGCCTACGCGCTGGTGGTCCACCACCCTCAGGATGAGGT
CCAGGTGACAGTAAATTTGGATCAGTATGTCTACATTCACTTCTGGGCCCTGGGCCAGCGAGTCGGGCAG
ATGCCCCTGAAGTCCAGCGTGGGCTCCAGGCGTGGCTTCTTCACCAAGCTGCCCCCTGCGGAGAGGAGAT
ACTTTAAGCGGGTGGTCCTGGCAGCCCGGACCAAACGGGGACACCTGGTACTGAAGAGTTTCAAGGACAC
GCCGCTGGAAGGCCTGGAGCAGCTGCTGCCGGAGCTGAAGGTGCGCACGCCCACCCTGCAGCGCGCCCTG
CTCAACCTCATGCTGGTAGTCTCCGGCGTGGCGATCTTCGTCAACGTGGGCATGGTGGTGCTAACCGACC
TCAAGGTGGCCACCTCCCTGCTGCTGCTGCTCTTCGCCATCTTCATGGGCCTGCGGGCCTCCAAGATGTT
CGGGCAGCGGCGCAGCGCGCAGGCGTTGGAGCTGGCGCACATGCTGTACTATCGCAGTACGTCCAACAAC
TCGGAGCTGCTCAGCGCCCTGGCCCTGCGCGCGCAGGACGAGCACACCAAGGAGGCGCTGCTGGCTCACA
GCTTCCTGGCCCGGCGGCCAGGGGGCACTCAAGGCTCGCCCGAAGAGACCTCCAGGTGGCTCCGGTCGGA
GGTGGAGAACTGGCTCCTAGCCAAGTCAGGCTGTGAGGTGACCTTCAACGGAACTCGGGCCCTGGCGCAT
CTGCAGGCCCTGACCCCCAGCATGGGATTGTACCCACCCCCGGGTTTCCCCAAACTAGACCCAGTGGCTC
CGATCACTTCCGAGCCCCCGCAAGCCACGCCCAGCAGTAACATCTCCTGA

Translation (459 aa):
MTVELWLRLRGKGLAMLHVTRGVWGSRVRVWPLLPALLGPPRALSSLAAKMGEYRKMWNPREPRDWAQQY
RERFIPFSKEQLLRLLIQEFHSSPAEKAALEAFSAHVDFCTLFHYHQILARLQALYDPINPDRETLDQPS
LTDPQRLSNEQEVLRALEPLLAQANFSPLSEDTLAYALVVHHPQDEVQVTVNLDQYVYIHFWALGQRVGQ
MPLKSSVGSRRGFFTKLPPAERRYFKRVVLAARTKRGHLVLKSFKDTPLEGLEQLLPELKVRTPTLQRAL
LNLMLVVSGVAIFVNVGMVVLTDLKVATSLLLLLFAIFMGLRASKMFGQRRSAQALELAHMLYYRSTSNN
SELLSALALRAQDEHTKEALLAHSFLARRPGGTQGSPEETSRWLRSEVENWLLAKSGCEVTFNGTRALAH
LQALTPSMGLYPPPGFPKLDPVAPITSEPPQATPSSNIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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