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Report for CCDS12705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12705.1 Public Homo sapiens 19 NOP53 24 110 108 CCDS HistoryNCBI Gene:29997Re-query CCDS DB by CCDS ID:12705.1Re-query CCDS DB by GeneID:29997See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12705.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246802.10 ENSP00000246802.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246802.10Link to Ensembl Protein Viewer:ENSP00000246802.4Re-query CCDS DB by Nucleotide ID:ENST00000246802Re-query CCDS DB by Protein ID:ENSP00000246802
Original member Current member NCBI NM_015710.5 NP_056525.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015710.5Link to Protein Sequence:NP_056525.2Re-query CCDS DB by Nucleotide ID:NM_015710Re-query CCDS DB by Protein ID:NP_056525Link to BLAST:NP_056525.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056525.2 478 Q9NZM5 478 100% 0 0

Chromosomal Locations for CCDS 12705.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47745560 47745783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47746967 47747031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47750178 47750286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47750908 47751107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47751520 47751590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47752512 47752607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47754527 47754631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47754709 47754891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47755348 47755523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47755756 47755822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47756528 47756604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47756688 47756744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47756999 47757005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGCGGCAGGAGGCAGTGGCGTTGGTGGGAAGCGCAGCTCGAAAAGCGATGCCGATTCTGGTTTCCTGG
GGCTGCGGCCCACTTCGGTGGACCCAGCGCTGAGGCGGCGGCGGCGAGGCCCAAGAAATAAGAAGCGGGG
CTGGCGGCGGCTTGCTCAGGAGCCGCTGGGGCTGGAGGTTGACCAGTTCCTGGAAGACGTGCGGCTACAG
GAGCGCACGAGCGGTGGCTTGTTGTCAGAGGCCCCAAATGAAAAACTCTTCTTCGTGGACACTGGCTCCA
AGGAAAAAGGGCTGACAAAGAAGAGAACCAAAGTCCAGAAGAAGTCACTGCTTCTCAAGAAACCCCTTCG
GGTTGACCTCATCCTCGAGAACACATCCAAAGTCCCTGCCCCCAAAGACGTCCTCGCCCACCAGGTCCCC
AACGCCAAGAAGCTCAGGCGGAAGGAGCAGCTATGGGAGAAGCTGGCCAAGCAGGGCGAGCTGCCCCGGG
AGGTGCGCAGGGCCCAGGCCCGGCTCCTCAACCCTTCTGCAACAAGGGCCAAGCCCGGGCCCCAGGACAC
CGTAGAGCGGCCCTTCTACGACCTCTGGGCCTCAGACAACCCCCTGGACAGGCCGTTGGTTGGCCAGGAT
GAGTTTTTCCTGGAGCAGACCAAGAAGAAAGGAGTGAAGCGGCCAGCACGCCTGCACACCAAGCCGTCCC
AGGCACCCGCCGTGGAGGTGGCGCCTGCCGGAGCTTCCTACAATCCATCCTTTGAAGACCACCAGACCCT
GCTCTCAGCGGCCCACGAGGTGGAGTTGCAGCGGCAGAAGGAGGCGGAGAAGCTGGAGCGGCAGCTGGCC
CTGCCCGCCACGGAGCAGGCCGCCACCCAGGAGTCCACATTCCAGGAGCTGTGCGAGGGGCTGCTGGAGG
AGTCGGATGGTGAGGGGGAGCCAGGCCAGGGCGAGGGGCCGGAGGCTGGGGATGCCGAGGTCTGTCCCAC
GCCCGCCCGCCTGGCCACCACAGAGAAGAAGACGGAGCAGCAGCGGCGGCGGGAGAAGGCTGTGCACAGG
CTGCGGGTACAGCAGGCCGCGTTGCGGGCCGCCCGGCTCCGGCACCAGGAGCTGTTCCGGCTGCGCGGGA
TCAAGGCCCAGGTGGCCCTGAGGCTGGCGGAGCTGGCGCGGCGGCAGAGGCGGCGGCAGGCGCGGCGGGA
GGCTGAGGCTGACAAGCCCCGAAGGCTGGGGCGGCTCAAGTACCAGGCACCTGACATCGACGTGCAGCTG
AGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGA
GCTTCCAGAGGAGGAATATGATCGAGCCTCGAGAGAGAGCCAAGTTCAAACGCAAGTACAAGGTGAAGCT
GGTGGAGAAGCGGGCGTTCCGTGAGATCCAGTTGTAG

Translation (478 aa):
MAAGGSGVGGKRSSKSDADSGFLGLRPTSVDPALRRRRRGPRNKKRGWRRLAQEPLGLEVDQFLEDVRLQ
ERTSGGLLSEAPNEKLFFVDTGSKEKGLTKKRTKVQKKSLLLKKPLRVDLILENTSKVPAPKDVLAHQVP
NAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPSATRAKPGPQDTVERPFYDLWASDNPLDRPLVGQD
EFFLEQTKKKGVKRPARLHTKPSQAPAVEVAPAGASYNPSFEDHQTLLSAAHEVELQRQKEAEKLERQLA
LPATEQAATQESTFQELCEGLLEESDGEGEPGQGEGPEAGDAEVCPTPARLATTEKKTEQQRRREKAVHR
LRVQQAALRAARLRHQELFRLRGIKAQVALRLAELARRQRRRQARREAEADKPRRLGRLKYQAPDIDVQL
SSELTDSLRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVKLVEKRAFREIQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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