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Report for CCDS12666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12666.1 Public Homo sapiens 19 RTN2 24 110 108 CCDS HistoryNCBI Gene:6253Re-query CCDS DB by CCDS ID:12666.1Re-query CCDS DB by GeneID:6253See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12666.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344680.8 ENSP00000345127.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000344680.8Link to Ensembl Protein Viewer:ENSP00000345127.3Re-query CCDS DB by Nucleotide ID:ENST00000344680Re-query CCDS DB by Protein ID:ENSP00000345127
Original member Current member NCBI NM_206900.3 NP_996783.1 Accepted alive Link to Nucleotide Sequence:NM_206900.3Link to Protein Sequence:NP_996783.1Re-query CCDS DB by Nucleotide ID:NM_206900Re-query CCDS DB by Protein ID:NP_996783Link to BLAST:NP_996783.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996783.1 472 O75298-2 472 100% 0 0

Chromosomal Locations for CCDS 12666.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45485708 45485789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45486055 45486113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45488471 45488517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45488637 45488706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45488848 45488986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45489346 45489553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45494166 45494420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45494526 45495005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45495095 45495139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45496792 45496825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGGGGCAGGTCCTGCCGGTCTTCGCCCACTGCAAAGAAGCTCCGTCTACAGCCTCCTCAACTCCTGATT
CCACAGAAGGAGGGAACGACGACTCTGATTTTCGAGAGCTGCACACAGCCCGGGAATTCTCAGAGGAGGA
CGAGGAGGAGACCACGTCGCAGGACTGGGGCACCCCCCGGGAGCTGACCTTCTCCTACATCGCCTTTGAT
GGTGTAGTGGGCTCCGGGGGCCGCAGGGATTCAACTGCCCGCCGCCCCCGCCCCCAGGGCCGCTCAGTCT
CGGAACCACGAGACCAGCACCCTCAGCCCAGCCTGGGCGACAGCTTGGAGAGCATCCCCAGCCTGAGCCA
ATCCCCGGAGCCTGGACGACGGGGTGATCCTGACACCGCGCCTCCATCCGAGCGCCCTCTGGAAGACCTG
AGGCTTCGGTTGGACCATCTGGGCTGGGTGGCCCGGGGAACGGGATCCGGGGAGGACTCTTCCACCAGCA
GCTCCACCCCGCTGGAAGACGAAGAACCCCAAGAACCCAACAGATTGGAGACAGGAGAAGCTGGGGAAGA
ACTGGACCTACGACTCCGACTTGCTCAGCCCTCATCGCCCGAGGTCTTGACTCCCCAGCTCAGTCCGGGC
TCTGGGACACCCCAGGCCGGTACTCCGTCCCCATCCCGATCGCGAGATTCGAACTCTGGGCCCGAAGAGC
CATTGCTGGAAGAGGAAGAAAAGCAGTGGGGGCCACTGGAGCGAGAGCCAGTAAGGGGACAGTGCCTCGA
TAGCACGGACCAATTAGAATTCACGGTGGAGCCACGCCTTCTAGTGGCGGACCTGCTGTACTGGAAGGAC
ACGAGGACGTCAGGAGTGGTCTTCACAGGCCTGATGGTCTCCCTCCTCTGCCTCCTGCACTTTAGCATCG
TGTCCGTGGCCGCGCACTTGGCTCTGTTGCTGCTCTGCGGCACCATCTCTCTCAGGGTTTACCGCAAAGT
GCTGCAGGCCGTGCACCGGGGGGATGGAGCCAACCCTTTCCAGGCCTACCTGGATGTGGACCTCACCCTG
ACTCGGGAGCAGACGGAACGTTTGTCCCACCAGATCACCTCCCGCGTGGTCTCGGCGGCCACGCAGCTGC
GGCACTTCTTCCTGGTAGAAGACCTCGTGGATTCCCTCAAGCTGGCCCTCCTCTTCTACATCTTGACCTT
CGTGGGTGCCATCTTCAATGGTTTGACTCTTCTCATTCTGGGAGTGATTGGTCTATTCACCATCCCCCTG
CTGTACCGGCAGCACCAGGCTCAGATCGACCAATATGTGGGGTTGGTGACCAATCAGTTGAGCCACATCA
AAGCTAAGATCCGAGCTAAAATCCCAGGGACCGGAGCCCTGGCCTCTGCAGCAGCCGCAGTCTCCGGATC
CAAAGCCAAAGCCGAATGA

Translation (472 aa):
MGQVLPVFAHCKEAPSTASSTPDSTEGGNDDSDFRELHTAREFSEEDEEETTSQDWGTPRELTFSYIAFD
GVVGSGGRRDSTARRPRPQGRSVSEPRDQHPQPSLGDSLESIPSLSQSPEPGRRGDPDTAPPSERPLEDL
RLRLDHLGWVARGTGSGEDSSTSSSTPLEDEEPQEPNRLETGEAGEELDLRLRLAQPSSPEVLTPQLSPG
SGTPQAGTPSPSRSRDSNSGPEEPLLEEEEKQWGPLEREPVRGQCLDSTDQLEFTVEPRLLVADLLYWKD
TRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQAVHRGDGANPFQAYLDVDLTL
TREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSLKLALLFYILTFVGAIFNGLTLLILGVIGLFTIPL
LYRQHQAQIDQYVGLVTNQLSHIKAKIRAKIPGTGALASAAAAVSGSKAKAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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