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Report for CCDS12646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12646.1 Public Homo sapiens 19 TOMM40 24 110 108 CCDS HistoryNCBI Gene:10452Re-query CCDS DB by CCDS ID:12646.1Re-query CCDS DB by GeneID:10452See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12646.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252487.9 ENSP00000252487.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000252487.9Link to Ensembl Protein Viewer:ENSP00000252487.4Re-query CCDS DB by Nucleotide ID:ENST00000252487Re-query CCDS DB by Protein ID:ENSP00000252487
Original member Current member EBI ENST00000405636.6 ENSP00000385184.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405636.6Link to Ensembl Protein Viewer:ENSP00000385184.2Re-query CCDS DB by Nucleotide ID:ENST00000405636Re-query CCDS DB by Protein ID:ENSP00000385184
Original member Current member EBI ENST00000426677.7 ENSP00000410339.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000426677.7Link to Ensembl Protein Viewer:ENSP00000410339.1Re-query CCDS DB by Nucleotide ID:ENST00000426677Re-query CCDS DB by Protein ID:ENSP00000410339
Original member Current member NCBI NM_001128916.2 NP_001122388.1 Accepted alive Link to Nucleotide Sequence:NM_001128916.2Link to Protein Sequence:NP_001122388.1Re-query CCDS DB by Nucleotide ID:NM_001128916Re-query CCDS DB by Protein ID:NP_001122388Link to BLAST:NP_001122388.1
Original member Current member NCBI NM_001128917.2 NP_001122389.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128917.2Link to Protein Sequence:NP_001122389.1Re-query CCDS DB by Nucleotide ID:NM_001128917Re-query CCDS DB by Protein ID:NP_001122389Link to BLAST:NP_001122389.1
Original member Current member NCBI NM_006114.3 NP_006105.1 Accepted alive Link to Nucleotide Sequence:NM_006114.3Link to Protein Sequence:NP_006105.1Re-query CCDS DB by Nucleotide ID:NM_006114Re-query CCDS DB by Protein ID:NP_006105Link to BLAST:NP_006105.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122388.1 361 O96008-1 361 100% 0 0
NP_001122389.1 361 O96008-1 361 100% 0 0
NP_006105.1 361 O96008-1 361 100% 0 0

Chromosomal Locations for CCDS 12646.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44891416 44891689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44892393 44892460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44892837 44892929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44893780 44893881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44893961 44894066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44900730 44900852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44901028 44901104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44901208 44901310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44903030 44903169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGGGGAACGTGTTGGCTGCCAGCTCGCCGCCCGCAGGGCCGCCACCGCCGCCTGCGCCGGCCCTCGTGG
GGCTGCCGCCACCTCCGCCCTCGCCGCCGGGCTTCACGCTGCCGCCGCTGGGAGGCAGCCTGGGCGCCGG
CACCAGTACGAGTCGAAGTTCGGAACGGACCCCCGGGGCTGCAACCGCCAGCGCCTCAGGGGCCGCCGAG
GATGGGGCCTGCGGCTGCCTGCCCAACCCGGGCACATTCGAGGAGTGCCACCGGAAGTGCAAGGAGCTGT
TTCCCATTCAGATGGAGGGTGTCAAGCTCACAGTCAACAAAGGGTTGAGTAACCATTTTCAGGTCAACCA
CACAGTAGCCCTCAGCACAATCGGGGAGTCCAACTACCACTTCGGGGTCACATATGTGGGGACAAAGCAG
CTGAGTCCCACAGAGGCGTTCCCTGTACTGGTGGGTGACATGGACAACAGTGGCAGTCTCAACGCTCAGG
TCATTCACCAGCTGGGCCCCGGTCTCAGGTCCAAGATGGCCATCCAGACCCAGCAGTCGAAGTTTGTGAA
CTGGCAGGTGGACGGGGAGTATCGGGGCTCTGACTTCACAGCAGCCGTCACCCTGGGGAACCCAGACGTC
CTCGTGGGTTCAGGAATCCTCGTAGCCCACTACCTCCAGAGCATCACGCCTTGCCTGGCCCTGGGTGGAG
AGCTGGTCTACCACCGGCGGCCTGGAGAGGAGGGCACTGTCATGTCTCTAGCTGGGAAATACACATTGAA
CAACTGGTTGGCAACGGTAACGTTGGGCCAGGCGGGCATGCACGCAACATACTACCACAAAGCCAGTGAC
CAGCTGCAGGTGGGTGTGGAGTTTGAGGCCAGCACAAGGATGCAGGACACCAGCGTCTCCTTCGGGTACC
AGCTGGACCTGCCCAAGGCCAACCTCCTCTTCAAAGGCTCTGTGGATAGCAACTGGATCGTGGGTGCCAC
GCTGGAGAAGAAGCTCCCACCCCTGCCCCTGACACTGGCCCTTGGGGCCTTCCTGAATCACCGCAAGAAC
AAGTTTCAGTGTGGCTTTGGCCTCACCATCGGCTGA

Translation (361 aa):
MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGAATASASGAAE
DGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVALSTIGESNYHFGVTYVGTKQ
LSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDV
LVGSGILVAHYLQSITPCLALGGELVYHRRPGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASD
QLQVGVEFEASTRMQDTSVSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKN
KFQCGFGLTIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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