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Report for CCDS12600.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12600.1 Public Homo sapiens 19 ERF 24 110 108 CCDS HistoryNCBI Gene:2077Re-query CCDS DB by CCDS ID:12600.1Re-query CCDS DB by GeneID:2077See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12600.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000222329.9 ENSP00000222329.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000222329.9Link to Ensembl Protein Viewer:ENSP00000222329.3Re-query CCDS DB by Nucleotide ID:ENST00000222329Re-query CCDS DB by Protein ID:ENSP00000222329
Original member Current member NCBI NM_006494.4 NP_006485.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006494.4Link to Protein Sequence:NP_006485.2Re-query CCDS DB by Nucleotide ID:NM_006494Re-query CCDS DB by Protein ID:NP_006485Link to BLAST:NP_006485.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006485.2 548 P50548-1 548 100% 0 0

Chromosomal Locations for CCDS 12600.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42248465 42249738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42249827 42249942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42250331 42250565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42254978 42254999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGAAGACCCCGGCGGACACAGGGTTTGCCTTCCCGGATTGGGCCTACAAGCCAGAGTCGTCCCCTGGCT
CAAGGCAGATCCAGCTGTGGCACTTTATCCTGGAGCTGCTGCGGAAGGAGGAGTACCAGGGCGTCATTGC
CTGGCAGGGGGACTACGGGGAATTCGTCATCAAAGACCCTGATGAGGTGGCCCGGCTGTGGGGCGTTCGC
AAGTGCAAGCCCCAGATGAATTACGACAAGCTGAGCCGGGCCCTGCGCTATTACTATAACAAGCGCATTC
TGCACAAGACCAAGGGGAAACGGTTCACCTACAAGTTCAATTTCAACAAACTGGTGCTGGTCAATTACCC
ATTCATTGATGTGGGGTTGGCTGGGGGTGCAGTGCCCCAGAGTGCCCCGCCAGTGCCGTCGGGTGGTAGC
CACTTCCGCTTCCCTCCCTCAACGCCCTCCGAGGTGCTGTCCCCCACCGAGGACCCCCGCTCACCACCAG
CCTGCTCTTCATCTTCATCTTCCCTCTTCTCGGCTGTGGTGGCCCGCCGCCTGGGCCGAGGCTCAGTCAG
TGACTGTAGTGATGGCACGTCAGAGCTGGAGGAACCGCTGGGAGAGGATCCCCGCGCCCGACCACCCGGC
CCTCCGGATCTGGGTGCCTTCCGAGGGCCCCCGCTGGCCCGCCTGCCCCATGACCCTGGTGTCTTCCGAG
TCTATCCCCGGCCTCGGGGTGGCCCTGAACCCCTCAGCCCCTTCCCTGTGTCGCCTCTGGCCGGTCCTGG
ATCCCTGCTGCCCCCTCAGCTCTCCCCGGCTCTGCCCATGACGCCCACCCACCTGGCCTACACTCCCTCG
CCCACGCTGAGCCCGATGTACCCCAGTGGTGGCGGGGGGCCCAGCGGCTCAGGGGGAGGCTCCCACTTCT
CCTTCAGCCCTGAGGACATGAAACGGTACCTGCAGGCCCACACCCAAAGCGTCTACAACTACCACCTCAG
CCCCCGCGCCTTCCTGCACTACCCTGGGCTGGTGGTGCCCCAGCCCCAGCGCCCTGACAAGTGCCCGCTG
CCGCCCATGGCACCCGAGACCCCACCGGTCCCCTCCTCGGCCTCGTCATCCTCTTCTTCTTCTTCCTCCC
CATTCAAGTTTAAGCTCCAGCCGCCCCCACTCGGACGCCGGCAGCGGGCAGCTGGGGAGAAGGCCGTAGC
CGGTGCTGACAAGAGCGGTGGCAGTGCAGGCGGGCTGGCTGAGGGGGCAGGGGCGCTAGCCCCACCGCCC
CCGCCACCACAGATCAAGGTGGAGCCCATCTCGGAAGGCGAGTCGGAGGAGGTAGAGGTGACTGACATCA
GTGATGAGGATGAGGAAGACGGGGAGGTGTTCAAGACGCCCCGTGCCCCACCTGCACCCCCTAAGCCTGA
GCCCGGCGAGGCACCCGGGGCATCCCAGTGCATGCCCCTCAAGCTACGCTTTAAGCGGCGCTGGAGTGAA
GACTGTCGCCTCGAAGGGGGTGGGGGCCCCGCTGGGGGCTTTGAGGATGAGGGTGAGGACAAGAAGGTGC
GTGGGGAGGGGCCTGGGGAGGCTGGGGGGCCCCTCACCCCAAGGCGGGTGAGCTCTGACCTCCAGCATGC
CACGGCCCAGCTCTCCCTGGAGCACCGAGACTCCTGA

Translation (548 aa):
MKTPADTGFAFPDWAYKPESSPGSRQIQLWHFILELLRKEEYQGVIAWQGDYGEFVIKDPDEVARLWGVR
KCKPQMNYDKLSRALRYYYNKRILHKTKGKRFTYKFNFNKLVLVNYPFIDVGLAGGAVPQSAPPVPSGGS
HFRFPPSTPSEVLSPTEDPRSPPACSSSSSSLFSAVVARRLGRGSVSDCSDGTSELEEPLGEDPRARPPG
PPDLGAFRGPPLARLPHDPGVFRVYPRPRGGPEPLSPFPVSPLAGPGSLLPPQLSPALPMTPTHLAYTPS
PTLSPMYPSGGGGPSGSGGGSHFSFSPEDMKRYLQAHTQSVYNYHLSPRAFLHYPGLVVPQPQRPDKCPL
PPMAPETPPVPSSASSSSSSSSSPFKFKLQPPPLGRRQRAAGEKAVAGADKSGGSAGGLAEGAGALAPPP
PPPQIKVEPISEGESEEVEVTDISDEDEEDGEVFKTPRAPPAPPKPEPGEAPGASQCMPLKLRFKRRWSE
DCRLEGGGGPAGGFEDEGEDKKVRGEGPGEAGGPLTPRRVSSDLQHATAQLSLEHRDS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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