NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12597.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12597.1 Public Homo sapiens 19 DEDD2 24 110 108 CCDS HistoryNCBI Gene:162989Re-query CCDS DB by CCDS ID:12597.1Re-query CCDS DB by GeneID:162989See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12597.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000595337.5 ENSP00000470082.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000595337.5Link to Ensembl Protein Viewer:ENSP00000470082.1Re-query CCDS DB by Nucleotide ID:ENST00000595337Re-query CCDS DB by Protein ID:ENSP00000470082
Original member Current member EBI ENST00000596251.6 ENSP00000471512.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000596251.6Link to Ensembl Protein Viewer:ENSP00000471512.1Re-query CCDS DB by Nucleotide ID:ENST00000596251Re-query CCDS DB by Protein ID:ENSP00000471512
Original member Current member NCBI NM_001270614.2 NP_001257543.1 Accepted alive Link to Nucleotide Sequence:NM_001270614.2Link to Protein Sequence:NP_001257543.1Re-query CCDS DB by Nucleotide ID:NM_001270614Re-query CCDS DB by Protein ID:NP_001257543Link to BLAST:NP_001257543.1
Original member Current member NCBI NM_133328.4 NP_579874.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133328.4Link to Protein Sequence:NP_579874.1Re-query CCDS DB by Nucleotide ID:NM_133328Re-query CCDS DB by Protein ID:NP_579874Link to BLAST:NP_579874.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257543.1 326 Q8WXF8-1 326 100% 0 0
NP_579874.1 326 Q8WXF8-1 326 100% 0 0

Chromosomal Locations for CCDS 12597.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42199438 42199829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42209700 42209840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42215133 42215252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42216680 42217007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGCGCTATCCGGGTCGACCCCGGCCCCGTGCTGGGAGGAGGATGAGTGCCTGGACTACTACGGGATGC
TGTCGCTTCACCGTATGTTCGAGGTGGTGGGCGGGCAACTGACCGAGTGCGAGCTGGAGCTCCTGGCCTT
TCTGCTGGATGAGGCTCCTGGCGCCGCCGGAGGCTTAGCCCGGGCCCGCAGCGGCCTAGAGCTCCTGCTG
GAGCTGGAGCGCCGCGGGCAGTGCGACGAGAGCAACCTGCGGCTGCTGGGGCAACTCCTGCGCGTGCTGG
CCCGCCACGACCTGCTGCCGCACCTGGCGCGCAAGCGGCGCCGGCCAGTGTCTCCAGAACGCTATAGCTA
TGGCACCTCCAGCTCTTCAAAGAGGACAGAGGGTAGCTGCCGTCGCCGTCGGCAGTCAAGCAGTTCTGCA
AATTCTCAGCAGGGTCAGTGGGAGACAGGCTCCCCCCCAACCAAGCGGCAGCGGCGGAGTCGGGGCCGGC
CCAGTGGTGGTGCCAGACGGCGGCGGAGAGGGGCCCCAGCCGCACCCCAGCAGCAGTCAGAGCCCGCCAG
ACCTTCCTCTGAAGGCAAAGTGACCTGTGACATCCGGCTCCGGGTTCGAGCAGAGTACTGCGAGCATGGG
CCAGCCTTGGAGCAGGGCGTGGCATCCCGGCGGCCCCAGGCGCTGGCGCGGCAGCTGGACGTGTTTGGGC
AGGCCACCGCAGTGCTGCGCTCAAGGGACCTGGGCTCTGTGGTTTGTGACATCAAGTTCTCAGAGCTCTC
CTATCTGGACGCCTTCTGGGGCGACTACCTGAGTGGCGCCCTGCTGCAGGCCCTGCGGGGCGTGTTCCTG
ACTGAGGCCCTGCGAGAGGCTGTGGGCCGGGAGGCTGTTCGCCTGCTGGTCAGTGTGGATGAGGCTGACT
ATGAGGCTGGCCGGCGCCGCCTGTTGCTGATGGAGGAGGAAGGGGGGCGGCGCCCGACAGAGGCCTCCTG
A

Translation (326 aa):
MALSGSTPAPCWEEDECLDYYGMLSLHRMFEVVGGQLTECELELLAFLLDEAPGAAGGLARARSGLELLL
ELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSA
NSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQQQSEPARPSSEGKVTCDIRLRVRAEYCEHG
PALEQGVASRRPQALARQLDVFGQATAVLRSRDLGSVVCDIKFSELSYLDAFWGDYLSGALLQALRGVFL
TEALREAVGREAVRLLVSVDEADYEAGRRRLLLMEEEGGRRPTEAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH