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Report for CCDS12587.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12587.1 Public Homo sapiens 19 LYPD4 24 110 108 CCDS HistoryNCBI Gene:147719Re-query CCDS DB by CCDS ID:12587.1Re-query CCDS DB by GeneID:147719See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12587.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000609812.6 ENSP00000476510.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000609812.6Link to Ensembl Protein Viewer:ENSP00000476510.1Re-query CCDS DB by Nucleotide ID:ENST00000609812Re-query CCDS DB by Protein ID:ENSP00000476510
Original member Current member NCBI NM_173506.7 NP_775777.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173506.7Link to Protein Sequence:NP_775777.3Re-query CCDS DB by Nucleotide ID:NM_173506Re-query CCDS DB by Protein ID:NP_775777Link to BLAST:NP_775777.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775777.3 246 Q6UWN0-1 246 100% 0 0

Chromosomal Locations for CCDS 12587.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41837143 41837345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41837935 41838261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41838881 41839024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41839219 41839285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGGGACCCCAGCATTTGAGACTTGTGCAGCTGTTCTGCCTTCTAGGGGCCATCTCCACTCTGCCTCGGG
CTGGAGCTCTTTTGTGCTATGAAGCAACAGCCTCAAGATTCAGAGCTGTTGCTTTCCATAACTGGAAGTG
GCTTCTGATGAGGAACATGGTGTGTAAGCTGCAAGAGGGCTGCGAGGAGACGCTAGTGTTCATTGAGACA
GGGACTGCAAGGGGAGTCGTGGGCTTTAAAGGCTGCAGCTCGTCTTCGTCTTACCCTGCGCAAATCTCCT
ACCTTGTTTCCCCACCCGGAGTGTCCATTGCCTCCTACAGTCGCGTCTGCCGGTCTTATCTCTGCAACAA
CCTCACCAATTTGGAGCCTTTTGTGAAACTCAAGGCCAGCACTCCTAAGTCTATCACATCTGCGTCCTGT
AGCTGCCCGACCTGTGTGGGCGAGCACATGAAGGATTGCCTCCCAAATTTTGTCACCACTAATTCTTGCC
CCTTGGCTGCTTCTACGTGTTACAGTTCCACCTTAAAATTTCAGGCAGGGTTTCTCAATACCACCTTCCT
CCTCATGGGGTGTGCTCGTGAACATAACCAGCTTTTAGCAGATTTTCATCATATTGGGAGCATCAAAGTG
ACTGAGGTCCTCAACATCTTAGAGAAGTCTCAGATTGTTGGTGCAGCATCCTCCAGGCAAGATCCTGCTT
GGGGTGTCGTCTTAGGCCTCCTGTTTGCCTTCAGGGACTGA

Translation (246 aa):
MGPQHLRLVQLFCLLGAISTLPRAGALLCYEATASRFRAVAFHNWKWLLMRNMVCKLQEGCEETLVFIET
GTARGVVGFKGCSSSSSYPAQISYLVSPPGVSIASYSRVCRSYLCNNLTNLEPFVKLKASTPKSITSASC
SCPTCVGEHMKDCLPNFVTTNSCPLAASTCYSSTLKFQAGFLNTTFLLMGCAREHNQLLADFHHIGSIKV
TEVLNILEKSQIVGAASSRQDPAWGVVLGLLFAFRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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