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Report for CCDS12292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12292.1 Public Homo sapiens 19 LYL1 24 110 108 CCDS HistoryNCBI Gene:4066Re-query CCDS DB by CCDS ID:12292.1Re-query CCDS DB by GeneID:4066See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12292.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264824.5 ENSP00000264824.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264824.5Link to Ensembl Protein Viewer:ENSP00000264824.3Re-query CCDS DB by Nucleotide ID:ENST00000264824Re-query CCDS DB by Protein ID:ENSP00000264824
Original member Current member NCBI NM_005583.5 NP_005574.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005583.5Link to Protein Sequence:NP_005574.2Re-query CCDS DB by Nucleotide ID:NM_005583Re-query CCDS DB by Protein ID:NP_005574Link to BLAST:NP_005574.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005574.2 280 P12980 280 100% 0 0

Chromosomal Locations for CCDS 12292.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13099319 13099734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13100657 13100748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13100837 13101171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGTGCCCGCCTCAGGCACAGGCAGAGGTGGGCCCCACCATGACTGAGAAGGCAGAGATGGTGTGTGCCC
CCAGCCCAGCGCCTGCCCCACCCCCTAAGCCTGCCTCGCCTGGGCCCCCGCAGGTGGAGGAGGTGGGCCA
CCGAGGAGGCTCCTCGCCCCCCAGGCTGCCACCTGGTGTACCAGTGATCAGCCTGGGCCACAGCAGGCCC
CCAGGGGTAGCCATGCCCACCACAGAGCTGGGCACTCTGCGGCCCCCGCTGCTGCAACTCTCCACCCTGG
GAACTGCCCCGCCCACTTTGGCCCTGCACTACCACCCTCACCCCTTCCTCAACAGTGTCTACATTGGGCC
AGCAGGACCTTTTAGCATCTTCCCTAGCAGCCGGTTGAAGCGGAGACCAAGCCACTGTGAGCTGGACCTG
GCTGAGGGGCACCAGCCCCAGAAGGTGGCCCGGCGCGTGTTCACCAACAGCCGGGAGCGCTGGCGGCAGC
AGAACGTTAACGGCGCCTTCGCCGAGCTGAGGAAGCTGCTGCCGACGCACCCGCCCGACCGGAAGCTGAG
CAAGAACGAGGTGCTCCGCCTAGCCATGAAGTACATCGGCTTCCTGGTGCGGCTGCTGCGCGACCAAGCC
GCAGCTCTGGCCGCAGGCCCCACCCCTCCCGGGCCTCGCAAACGGCCGGTGCACCGGGTCCCAGACGACG
GCGCCCGCCGGGGATCCGGACGCAGGGCCGAGGCGGCAGCGCGCTCGCAGCCCGCGCCCCCGGCCGACCC
CGACGGCAGCCCCGGTGGAGCGGCCCGGCCCATCAAGATGGAGCAAACCGCTTTGAGCCCAGAGGTGCGG
TGA

Translation (280 aa):
MCPPQAQAEVGPTMTEKAEMVCAPSPAPAPPPKPASPGPPQVEEVGHRGGSSPPRLPPGVPVISLGHSRP
PGVAMPTTELGTLRPPLLQLSTLGTAPPTLALHYHPHPFLNSVYIGPAGPFSIFPSSRLKRRPSHCELDL
AEGHQPQKVARRVFTNSRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVRLLRDQA
AALAAGPTPPGPRKRPVHRVPDDGARRGSGRRAEAAARSQPAPPADPDGSPGGAARPIKMEQTALSPEVR


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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