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Report for CCDS12287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12287.1 Public Homo sapiens 19 FARSA 24 110 108 CCDS HistoryNCBI Gene:2193Re-query CCDS DB by CCDS ID:12287.1Re-query CCDS DB by GeneID:2193See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12287.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314606.9 ENSP00000320309.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314606.9Link to Ensembl Protein Viewer:ENSP00000320309.3Re-query CCDS DB by Nucleotide ID:ENST00000314606Re-query CCDS DB by Protein ID:ENSP00000320309
Original member Current member NCBI NM_004461.3 NP_004452.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004461.3Link to Protein Sequence:NP_004452.1Re-query CCDS DB by Nucleotide ID:NM_004461Re-query CCDS DB by Protein ID:NP_004452Link to BLAST:NP_004452.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004452.1 508 Q9Y285-1 508 100% 0 0

Chromosomal Locations for CCDS 12287.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12922748 12922886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12924151 12924265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12924449 12924526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12924639 12924807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12924904 12925003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12925090 12925174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12928342 12928457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12928535 12928663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12928755 12928847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12930223 12930341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12930429 12930527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12930612 12930749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12933550 12933696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGGCGGATGGTCAGGTGGCGGAACTGCTGCTCCGGCGGCTGGAGGCGTCTGATGGCGGCCTGGACAGCG
CCGAGTTGGCGGCTGAGCTGGGCATGGAGCACCAGGCGGTGGTGGGCGCCGTGAAGAGCCTTCAGGCGCT
GGGCGAGGTCATCGAGGCTGAACTTCGGTCCACCAAGCACTGGGAGCTTACTGCGGAGGGCGAGGAGATT
GCCCGGGAGGGCAGCCATGAGGCCCGTGTGTTTCGAAGCATTCCCCCAGAGGGCCTGGCCCAGAGCGAGC
TTATGCGACTGCCCAGTGGCAAAGTGGGCTTCAGCAAGGCCATGTCCAACAAGTGGATTCGGGTGGACAA
GAGTGCGGCTGACGGGCCCCGGGTGTTCCGAGTGGTGGACAGCATGGAGGATGAGGTGCAGCGGCGGCTC
CAGCTGGTCCGGGGGGGACAGGCTGAGAAGCTGGGGGAGAAGGAGAGGAGCGAGCTGAGGAAGAGGAAGC
TGTTGGCTGAAGTGACTCTGAAGACCTACTGGGTGAGCAAAGGCAGTGCCTTTAGTACCAGCATCTCCAA
GCAAGAGACAGAGCTGAGCCCAGAGATGATCTCCAGTGGCTCTTGGCGGGACCGGCCCTTCAAGCCCTAC
AACTTCTTGGCCCACGGTGTCCTCCCCGACAGCGGCCACCTTCACCCGCTGCTCAAGGTCCGCTCCCAGT
TCCGACAGATCTTCCTGGAGATGGGGTTCACCGAGATGCCGACTGATAACTTCATTGAGAGCTCCTTCTG
GAACTTTGACGCCCTCTTCCAGCCCCAGCAGCACCCAGCCCGTGACCAGCACGACACCTTCTTCCTTCGA
GATCCAGCGGAGGCCCTGCAGCTCCCAATGGACTATGTCCAGCGGGTCAAGCGGACCCACTCTCAGGGCG
GCTACGGCTCACAGGGGTACAAGTATAACTGGAAGCTGGACGAGGCCCGGAAAAACCTACTGCGAACCCA
CACCACATCAGCCAGCGCCCGTGCGCTCTACCGCCTTGCCCAGAAGAAGCCCTTCACTCCGGTCAAGTAC
TTCTCCATCGACCGCGTATTCCGGAATGAGACCCTGGACGCCACGCACCTGGCTGAGTTCCACCAGATCG
AGGGCGTGGTGGCGGATCATGGTCTCACCTTGGGCCACCTCATGGGCGTTCTGCGGGAGTTCTTCACCAA
GCTGGGTATCACGCAACTCCGCTTCAAGCCAGCCTACAACCCATACACAGAGCCCAGCATGGAGGTGTTC
AGCTACCACCAAGGCCTGAAGAAGTGGGTGGAGGTCGGAAACTCGGGGGTCTTCCGTCCAGAGATGCTGC
TGCCCATGGGGCTTCCCGAGAACGTGTCGGTCATTGCCTGGGGCCTCTCCCTGGAGCGCCCAACGATGAT
CAAATATGGCATCAACAATATCCGGGAGCTGGTGGGCCACAAGGTGAACCTGCAGATGGTGTATGACAGT
CCCCTGTGCCGCCTGGATGCCGAGCCGAGGCCCCCTCCCACACAGGAGGCTGCGTGA

Translation (508 aa):
MADGQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEI
AREGSHEARVFRSIPPEGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRL
QLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPY
NFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLR
DPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKY
FSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF
SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDS
PLCRLDAEPRPPPTQEAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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