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Report for CCDS12268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12268.1 Public Homo sapiens 19 ZNF439 24 110 108 CCDS HistoryNCBI Gene:90594Re-query CCDS DB by CCDS ID:12268.1Re-query CCDS DB by GeneID:90594See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12268.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304030.2 ENSP00000305077.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000304030.2Link to Ensembl Protein Viewer:ENSP00000305077.2Re-query CCDS DB by Nucleotide ID:ENST00000304030Re-query CCDS DB by Protein ID:ENSP00000305077
Original member Current member NCBI NM_152262.3 NP_689475.1 Accepted alive Link to Nucleotide Sequence:NM_152262.3Link to Protein Sequence:NP_689475.1Re-query CCDS DB by Nucleotide ID:NM_152262Re-query CCDS DB by Protein ID:NP_689475Link to BLAST:NP_689475.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689475.1 499 Q8NDP4 499 100% 0 0

Chromosomal Locations for CCDS 12268.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11866157 11866331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11866537 11866597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11867306 11868569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGCTGTCACTCTCACCCATCCTCCTCTACACATGTGAGATGTTTCAGGACCCAGTGGCTTTTAAGGATG
TGGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATATTTCCCAGAAGAATCTCTACAGGGAAGT
GATGCTGGAAACTTTCTGGAACCTGACCTCTATAGGAAAAAAGTGGAAAGACCAGAACATTGAATATGAG
TACCAAAACCCCAGGAGAAACTTCAGGAGTGTCACAGAAGAGAAAGTCAATGAAATTAAAGAAGACAGTC
ATTGTGGAGAAACTTTTACCCCAGTTCCAGATGACAGGCTGAACTTCCAGAAGAAGAAAGCTTCTCCTGA
AGTAAAATCATGTGACAGCTTTGTGTGTGAAGTTGGCCTAGGTAACTCATCTTCTAATATGAACATCAGA
GGTGACACTGGACACAAGGCATGTGAATGTCAGGAATATGGACCAAAGCCATGGAAGAGTCAACAACCTA
AAAAAGCCTTCAGATATCACCCCTCCTTGAGAACACAAGAAAGGGATCACACTGGAAAGAAACCCTATGC
TTGTAAAGAATGTGGAAAAAACATTATTTACCATTCAAGCATTCAAAGACACATGGTAGTGCACAGTGGG
GATGGACCTTATAAATGTAAGTTTTGTGGGAAAGCATTCCATTGTCTCAGTTTATATCTTATCCATGAAA
GAACTCACACTGGAGAGAAACCGTATGAATGTAAACAATGTGGTAAATCTTTTAGTTATTCTGCTACCCA
TCGAATACATGAAAGAACTCACATTGGAGAAAAGCCTTATGAATGTCAGGAATGTGGGAAAGCATTCCAT
AGTCCCAGATCCTGTCACAGACATGAAAGGAGTCACATGGGAGAGAAGGCTTATCAATGTAAGGAATGTG
GAAAAGCATTCATGTGTCCCCGTTATGTTCGTAGACATGAAAGGACCCACTCTAGGAAAAAACTTTATGA
ATGTAAGCAGTGTGGGAAAGCATTATCCTCTCTTACAAGTTTTCAAACACACATAAGAATGCACTCTGGA
GAAAGACCTTATGAATGTAAGACATGTGGGAAAGGCTTTTATTCTGCCAAGTCATTTCAAAGACATGAAA
AAACTCACAGTGGAGAGAAACCGTATAAATGCAAGCAATGTGGTAAAGCCTTCACTCGTTCCGGTTCCTT
TCGATATCATGAAAGGACTCACACTGGAGAGAAACCCTATGAGTGTAAGCAATGTGGGAAAGCCTTCAGA
TCTGCCCCAAATCTTCAATTGCATGGTAGGACTCACACTGGAGAGAAACCGTATCAATGTAAGGAATGTG
GGAAAGCTTTCAGATCTGCCTCACAACTTCGAATCCATCGTAGGATTCACACTGGAGAGAAACCCTATGA
ATGTAAGAAATGTGGGAAAGCCTTCAGATATGTCCAGAACTTTCGATTTCATGAAAGGACACAAACACAT
AAGAATGCACTCTGGAGAAAGACCTTATAA

Translation (499 aa):
MLSLSPILLYTCEMFQDPVAFKDVAVNFTQEEWALLDISQKNLYREVMLETFWNLTSIGKKWKDQNIEYE
YQNPRRNFRSVTEEKVNEIKEDSHCGETFTPVPDDRLNFQKKKASPEVKSCDSFVCEVGLGNSSSNMNIR
GDTGHKACECQEYGPKPWKSQQPKKAFRYHPSLRTQERDHTGKKPYACKECGKNIIYHSSIQRHMVVHSG
DGPYKCKFCGKAFHCLSLYLIHERTHTGEKPYECKQCGKSFSYSATHRIHERTHIGEKPYECQECGKAFH
SPRSCHRHERSHMGEKAYQCKECGKAFMCPRYVRRHERTHSRKKLYECKQCGKALSSLTSFQTHIRMHSG
ERPYECKTCGKGFYSAKSFQRHEKTHSGEKPYKCKQCGKAFTRSGSFRYHERTHTGEKPYECKQCGKAFR
SAPNLQLHGRTHTGEKPYQCKECGKAFRSASQLRIHRRIHTGEKPYECKKCGKAFRYVQNFRFHERTQTH
KNALWRKTL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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