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Report for CCDS12251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12251.1 Public Homo sapiens 19 YIPF2 24 110 108 CCDS HistoryNCBI Gene:78992Re-query CCDS DB by CCDS ID:12251.1Re-query CCDS DB by GeneID:78992See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12251.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253031.6 ENSP00000253031.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000253031.6Link to Ensembl Protein Viewer:ENSP00000253031.1Re-query CCDS DB by Nucleotide ID:ENST00000253031Re-query CCDS DB by Protein ID:ENSP00000253031
Original member Current member EBI ENST00000586748.6 ENSP00000466055.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000586748.6Link to Ensembl Protein Viewer:ENSP00000466055.1Re-query CCDS DB by Nucleotide ID:ENST00000586748Re-query CCDS DB by Protein ID:ENSP00000466055
Original member Current member NCBI NM_001321439.2 NP_001308368.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001321439.2Link to Protein Sequence:NP_001308368.1Re-query CCDS DB by Nucleotide ID:NM_001321439Re-query CCDS DB by Protein ID:NP_001308368Link to BLAST:NP_001308368.1
Original member Current member NCBI NM_024029.5 NP_076934.1 Accepted alive Link to Nucleotide Sequence:NM_024029.5Link to Protein Sequence:NP_076934.1Re-query CCDS DB by Nucleotide ID:NM_024029Re-query CCDS DB by Protein ID:NP_076934Link to BLAST:NP_076934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308368.1 316 Q9BWQ6 316 100% 0 0
NP_076934.1 316 Q9BWQ6 316 100% 0 0

Chromosomal Locations for CCDS 12251.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10923291 10923407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10923495 10923677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10923833 10923999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10924076 10924192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10925686 10925773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10927630 10927716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10927799 10927959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10928380 10928410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGCATCGGCCGACGAGCTGACCTTCCATGAATTCGAGGAGGCCACTAATCTTCTGGCTGACACCCCAG
ATGCAGCCACCACCAGCAGAAGCGATCAGCTGACCCCACAAGGGCACGTGGCTGTGGCCGTGGGCTCAGG
TGGCAGCTATGGAGCCGAGGATGAGGTGGAGGAGGAGAGTGACAAGGCCGCGCTCCTGCAGGAGCAGCAG
CAGCAGCAGCAGCCGGGATTCTGGACCTTCAGCTACTATCAGAGCTTCTTTGACGTGGACACCTCACAGG
TCCTGGACCGGATCAAAGGCTCACTGCTGCCCCGGCCTGGCCACAACTTTGTGCGGCACCATCTGCGGAA
TCGGCCGGATCTGTATGGCCCCTTCTGGATCTGTGCCACGTTGGCCTTTGTCCTGGCCGTCACTGGCAAC
CTGACGCTGGTGCTGGCCCAGAGGAGGGACCCCTCCATCCACTACAGCCCCCAGTTCCACAAGGTGACCG
TGGCAGGCATCAGCATCTACTGCTATGCGTGGCTGGTGCCCCTGGCCCTGTGGGGCTTCCTGCGGTGGCG
CAAGGGTGTCCAGGAGCGCATGGGGCCCTACACCTTCCTGGAGACTGTGTGCATCTACGGCTACTCCCTC
TTTGTCTTCATCCCCATGGTGGTCCTGTGGCTCATCCCTGTGCCTTGGCTGCAGTGGCTCTTTGGGGCGC
TGGCCCTGGGCCTGTCAGCCGCCGGGCTGGTATTCACCCTCTGGCCCGTGGTCCGTGAGGACACCAGGCT
GGTGGCCACAGTGCTGCTGTCCGTGGTCGTGCTGCTCCACGCCCTCCTGGCCATGGGCTGTAAGTTGTAC
TTCTTCCAGTCGCTGCCTCCGGAGAACGTGGCTCCTCCACCCCAAATCACATCTCTGCCCTCAAACATCG
CGCTGTCCCCTACCTTGCCGCAGTCCCTGGCCCCCTCCTAG

Translation (316 aa):
MASADELTFHEFEEATNLLADTPDAATTSRSDQLTPQGHVAVAVGSGGSYGAEDEVEEESDKAALLQEQQ
QQQQPGFWTFSYYQSFFDVDTSQVLDRIKGSLLPRPGHNFVRHHLRNRPDLYGPFWICATLAFVLAVTGN
LTLVLAQRRDPSIHYSPQFHKVTVAGISIYCYAWLVPLALWGFLRWRKGVQERMGPYTFLETVCIYGYSL
FVFIPMVVLWLIPVPWLQWLFGALALGLSAAGLVFTLWPVVREDTRLVATVLLSVVVLLHALLAMGCKLY
FFQSLPPENVAPPPQITSLPSNIALSPTLPQSLAPS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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