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Report for CCDS12108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12108.1 Public Homo sapiens 19 DOHH 24 110 108 CCDS HistoryNCBI Gene:83475Re-query CCDS DB by CCDS ID:12108.1Re-query CCDS DB by GeneID:83475See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12108.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427575.6 ENSP00000398882.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000427575.6Link to Ensembl Protein Viewer:ENSP00000398882.1Re-query CCDS DB by Nucleotide ID:ENST00000427575Re-query CCDS DB by Protein ID:ENSP00000398882
Original member Current member EBI ENST00000672935.1 ENSP00000500806.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672935.1Link to Ensembl Protein Viewer:ENSP00000500806.1Re-query CCDS DB by Nucleotide ID:ENST00000672935Re-query CCDS DB by Protein ID:ENSP00000500806
Original member Current member NCBI NM_001145165.2 NP_001138637.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145165.2Link to Protein Sequence:NP_001138637.1Re-query CCDS DB by Nucleotide ID:NM_001145165Re-query CCDS DB by Protein ID:NP_001138637Link to BLAST:NP_001138637.1
Original member Current member NCBI NM_031304.5 NP_112594.1 Accepted alive Link to Nucleotide Sequence:NM_031304.5Link to Protein Sequence:NP_112594.1Re-query CCDS DB by Nucleotide ID:NM_031304Re-query CCDS DB by Protein ID:NP_112594Link to BLAST:NP_112594.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138637.1 302 Q9BU89 302 100% 0 0
NP_112594.1 302 Q9BU89 302 100% 0 0

Chromosomal Locations for CCDS 12108.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3491492 3491811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3492262 3492499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3494028 3494104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3496541 3496814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGGTGACGGAGCAGGAGGTGGATGCCATCGGGCAGACGCTGGTGGACCCCAAGCAGCCCCTGCAGGCCC
GCTTCCGGGCGCTGTTCACGCTGCGTGGGCTCGGCGGCCCAGGCGCCATTGCATGGATCAGCCAGGCCTT
CGATGACGATTCCGCCCTGCTCAAGCACGAGCTGGCCTACTGCCTGGGCCAGATGCAGGATGCCCGCGCC
ATCCCCATGCTGGTGGACGTGCTGCAAGACACCCGTCAGGAGCCCATGGTGCGCCATGAGGCAGGGGAGG
CCCTGGGGGCCATCGGGGACCCGGAAGTTCTGGAGATCCTGAAGCAGTATTCCTCGGACCCCGTCATCGA
GGTGGCCGAGACCTGCCAGCTGGCCGTGCGCAGGCTGGAGTGGCTGCAGCAGCACGGCGGGGAGCCGGCG
GCGGGACCCTACCTCTCCGTGGACCCTGCCCCGCCGGCTGAGGAGCGTGACGTGGGGCGCCTGCGGGAGG
CGCTGCTGGATGAGTCCCGGCCGCTCTTCGAGCGATACCGCGCCATGTTCGCCCTGCGCAACGCGGGAGG
CGAGGAGGCCGCCCTGGCGCTGGCCGAGGGTCTGCACTGTGGGAGCGCCCTCTTCCGCCACGAGGTCGGC
TACGTCCTGGGACAGCTGCAGCACGAGGCGGCGGTGCCCCAGCTGGCGGCCGCCCTGGCCCGATGCACCG
AGAACCCCATGGTGCGGCACGAGTGCGCGGAGGCCCTGGGCGCCATTGCCCGGCCCGCCTGCCTGGCCGC
GCTGCAGGCTCACGCGGACGACCCAGAGCGCGTGGTGCGTGAGAGCTGCGAGGTGGCTCTGGACATGTAT
GAGCACGAGACCGGGCGGGCCTTCCAGTACGCGGACGGCCTGGAGCAGCTGCGCGGGGCCCCCTCCTAG

Translation (302 aa):
MVTEQEVDAIGQTLVDPKQPLQARFRALFTLRGLGGPGAIAWISQAFDDDSALLKHELAYCLGQMQDARA
IPMLVDVLQDTRQEPMVRHEAGEALGAIGDPEVLEILKQYSSDPVIEVAETCQLAVRRLEWLQQHGGEPA
AGPYLSVDPAPPAEERDVGRLREALLDESRPLFERYRAMFALRNAGGEEAALALAEGLHCGSALFRHEVG
YVLGQLQHEAAVPQLAAALARCTENPMVRHECAEALGAIARPACLAALQAHADDPERVVRESCEVALDMY
EHETGRAFQYADGLEQLRGAPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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